Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans.
3D modelling
Cephalopod
Firefly squid
RNA editing
Repetitive elements
Journal
Marine biotechnology (New York, N.Y.)
ISSN: 1436-2236
Titre abrégé: Mar Biotechnol (NY)
Pays: United States
ID NLM: 100892712
Informations de publication
Date de publication:
Dec 2020
Dec 2020
Historique:
received:
08
04
2020
accepted:
28
09
2020
pubmed:
25
10
2020
medline:
24
7
2021
entrez:
24
10
2020
Statut:
ppublish
Résumé
Watasenia scintillans, a sparkling enope squid, has bioluminescence organs to illuminate its body with its own luciferase activity. To clarify the molecular mechanism underlying its scintillation, we analysed high-throughput sequencing data acquired previously and obtained draft genome sequences accomplished with comparative genomic data among the cephalopods. The genome mapped by transcriptome data showed that (1) RNA editing contributed to transcriptome variation of lineage specific genes, such as W. scintillans luciferase, and (2) two types of luciferase enzymes were characterized with reasonable 3D models docked to a luciferin molecule. We report two different types of luciferase in one organism and possibly related to variety of colour types in the W. scintillans fluorescent organs.
Identifiants
pubmed: 33098466
doi: 10.1007/s10126-020-10001-8
pii: 10.1007/s10126-020-10001-8
pmc: PMC7708342
doi:
Substances chimiques
Luminescent Proteins
0
Luciferases
EC 1.13.12.-
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
760-771Subventions
Organisme : Japan Society for the Promotion of Science (JP)
ID : 19H03200
Organisme : Shimane University
ID : none
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