Stable Isotope Probing Identifies Bacterioplankton Lineages Capable of Utilizing Dissolved Organic Matter Across a Range of Bioavailability.
DOM
Sargasso Sea
bioavailability
copiotrophs
labile
oligotrophs
recalcitrant
stable isotope probing
Journal
Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977
Informations de publication
Date de publication:
2020
2020
Historique:
received:
06
07
2020
accepted:
03
09
2020
entrez:
29
10
2020
pubmed:
30
10
2020
medline:
30
10
2020
Statut:
epublish
Résumé
Bacterioplankton consume about half of the dissolved organic matter (DOM) produced by phytoplankton. DOM released from phytoplankton consists of a myriad of compounds that span a range of biological reactivity from labile to recalcitrant. Linking specific bacterioplankton lineages to the incorporation of DOM compounds into biomass is important to understand microbial niche partitioning. We conducted a series of DNA-stable isotope probing (SIP) experiments using
Identifiants
pubmed: 33117322
doi: 10.3389/fmicb.2020.580397
pmc: PMC7575717
doi:
Types de publication
Journal Article
Langues
eng
Pagination
580397Informations de copyright
Copyright © 2020 Liu, Baetge, Comstock, Opalk, Parsons, Halewood, English, Giovannoni, Bolaños, Nelson, Vergin and Carlson.
Références
Biotechnol Prog. 2019 Sep;35(5):e2835
pubmed: 31063628
PLoS One. 2012;7(7):e41204
pubmed: 22829928
Proc Natl Acad Sci U S A. 1996 Jul 23;93(15):7979-84
pubmed: 8755588
Environ Sci Technol. 2014 Jul 1;48(13):7461-8
pubmed: 24896646
Plant Physiol. 2001 Oct;127(2):529-42
pubmed: 11598227
Nucleic Acids Res. 2013 Jan 7;41(1):e1
pubmed: 22933715
Environ Microbiol. 2016 May;18(5):1403-14
pubmed: 26271760
Science. 2005 Aug 19;309(5738):1242-5
pubmed: 16109880
Appl Environ Microbiol. 2000 Apr;66(4):1692-7
pubmed: 10742262
ISME J. 2016 Sep;10(9):2158-73
pubmed: 26953597
Sci Rep. 2012;2:696
pubmed: 23019517
Sci Adv. 2017 Sep 27;3(9):e1602976
pubmed: 28959723
ISME J. 2016 Apr;10(4):1015-9
pubmed: 26381585
Front Microbiol. 2013 May 16;4:122
pubmed: 23720656
Ann Rev Mar Sci. 2017 Jan 3;9:231-255
pubmed: 27687974
PLoS One. 2013;8(2):e57923
pubmed: 23460914
PLoS One. 2012;7(5):e37118
pubmed: 22615914
ISME J. 2013 Jul;7(7):1322-32
pubmed: 23466704
Environ Microbiol. 2010 Mar;12(3):616-27
pubmed: 19930445
Environ Microbiol. 2012 Jun;14(6):1500-16
pubmed: 22507662
Nat Methods. 2016 Jul;13(7):581-3
pubmed: 27214047
Can J Microbiol. 1962 Apr;8:229-39
pubmed: 13902807
PLoS One. 2013 Apr 22;8(4):e61217
pubmed: 23630581
Proc Natl Acad Sci U S A. 2014 May 20;111(20):7166-7
pubmed: 24812126
Nat Rev Microbiol. 2007 Oct;5(10):820-6
pubmed: 17853909
Appl Environ Microbiol. 2014 Oct;80(19):6013-22
pubmed: 25063662
Environ Microbiol. 2019 Jul;21(7):2533-2543
pubmed: 31044472
Nat Commun. 2015 Mar 31;6:6711
pubmed: 25826720
BMC Bioinformatics. 2016 Apr 19;17:172
pubmed: 27094401
Cytometry. 1989 Sep;10(5):551-7
pubmed: 2776571
Appl Environ Microbiol. 2002 Aug;68(8):3878-85
pubmed: 12147485
Ann Rev Mar Sci. 2013;5:421-45
pubmed: 22881353
Nat Rev Microbiol. 2014 Oct;12(10):686-98
pubmed: 25134618
ISME J. 2010 Aug;4(8):975-88
pubmed: 20357833
mBio. 2017 Apr 18;8(2):
pubmed: 28420738
Environ Microbiol. 2019 Feb;21(2):541-556
pubmed: 30461157
Proc Natl Acad Sci U S A. 2009 Sep 15;106(37):15527-33
pubmed: 19805210
Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):8089-94
pubmed: 24753593
Sci Rep. 2018 Feb 7;8(1):2542
pubmed: 29416076
Nature. 2008 Feb 7;451(7179):708-11
pubmed: 18223640
Appl Environ Microbiol. 2010 Oct;76(19):6412-22
pubmed: 20675448
Cell Discov. 2015 Apr 28;1:15004
pubmed: 27462405
ISME J. 2012 Jun;6(6):1186-99
pubmed: 22170421
Annu Rev Microbiol. 2017 Sep 8;71:711-730
pubmed: 28731846
Environ Microbiol Rep. 2009 Dec;1(6):545-54
pubmed: 23765933
Proc Natl Acad Sci U S A. 2015 Aug 11;112(32):9938-43
pubmed: 26221022
Curr Opin Biotechnol. 2003 Jun;14(3):296-302
pubmed: 12849783
Environ Microbiol. 2018 Aug;20(8):2709-2726
pubmed: 29521439
J Bacteriol. 2002 Jan;184(1):278-89
pubmed: 11741869
Appl Environ Microbiol. 1990 Aug;56(8):2572-5
pubmed: 2403262
Appl Environ Microbiol. 2002 Mar;68(3):1446-53
pubmed: 11872500
Front Microbiol. 2019 Dec 17;10:2682
pubmed: 31920997
Environ Microbiol. 2006 Nov;8(11):2022-30
pubmed: 17014500
Proc Natl Acad Sci U S A. 2020 Mar 24;117(12):6599-6607
pubmed: 32170018
ISME J. 2009 Oct;3(10):1148-63
pubmed: 19494846
Front Microbiol. 2017 Oct 12;8:1985
pubmed: 29075248
Appl Environ Microbiol. 2010 Oct;76(20):6760-8
pubmed: 20729316
Appl Environ Microbiol. 2003 Jan;69(1):199-211
pubmed: 12513996
PLoS One. 2014 Apr 21;9(4):e95842
pubmed: 24752604
ISME J. 2016 Jan;10(1):39-50
pubmed: 26196334
ISME J. 2012 Jun;6(6):1210-21
pubmed: 22158395
Philos Trans R Soc Lond B Biol Sci. 2006 Nov 29;361(1475):2009-21
pubmed: 17062417
Microb Ecol. 2007 Apr;53(3):435-42
pubmed: 17072677
Environ Microbiol. 2006 Aug;8(8):1361-70
pubmed: 16872400
Appl Environ Microbiol. 2012 Apr;78(7):2316-27
pubmed: 22287013
Proc Natl Acad Sci U S A. 2010 Sep 21;107(38):16420-7
pubmed: 20807744
Appl Environ Microbiol. 1988 Jan;54(1):105-9
pubmed: 3345073
Chem Rev. 2007 Feb;107(2):419-42
pubmed: 17300139
Environ Microbiol. 2006 Jun;8(6):1074-84
pubmed: 16689728
Nat Protoc. 2007;2(4):860-6
pubmed: 17446886
Environ Microbiol. 2014 Jun;16(6):1668-81
pubmed: 24020678
Environ Sci Process Impacts. 2016 Jul 13;18(7):918-27
pubmed: 27363664
Proc Natl Acad Sci U S A. 2018 Jan 16;115(3):E400-E408
pubmed: 29255014
Nat Rev Microbiol. 2010 Aug;8(8):593-9
pubmed: 20601964
ISME J. 2018 Jan;12(1):59-76
pubmed: 28895945
FEMS Microbiol Ecol. 2017 Jan;93(1):
pubmed: 27789536
Environ Microbiol. 2019 Nov;21(11):4062-4075
pubmed: 31336026
Nature. 2002 Aug 8;418(6898):630-3
pubmed: 12167859
Appl Environ Microbiol. 2007 May;73(10):3189-95
pubmed: 17369331
Biotechnol Lett. 2014 Oct;36(10):2029-35
pubmed: 24930102
Front Microbiol. 2019 Mar 19;10:493
pubmed: 30941109
PeerJ. 2016 Jan 05;4:e1511
pubmed: 26839738
ISME J. 2017 Dec;11(12):2781-2792
pubmed: 28800138
ISME J. 2007 Jun;1(2):103-10
pubmed: 18043620
Proc Natl Acad Sci U S A. 2014 May 20;111(20):7202-7
pubmed: 24733921
Environ Microbiol Rep. 2016 Feb;8(1):68-75
pubmed: 26525158
Sci Total Environ. 2009 Jun 1;407(12):3611-9
pubmed: 18573518
Science. 2012 May 4;336(6081):608-11
pubmed: 22556258
mBio. 2020 Jan 7;11(1):
pubmed: 31911493
Environ Microbiol. 2017 Sep;19(9):3450-3464
pubmed: 28618153
Int J Syst Evol Microbiol. 2013 Jun;63(Pt 6):2207-2215
pubmed: 23148094
Appl Environ Microbiol. 2000 Nov;66(11):4634-40
pubmed: 11055904
Front Microbiol. 2017 Mar 07;8:353
pubmed: 28326069
Appl Environ Microbiol. 2011 Nov;77(21):7490-8
pubmed: 21742918
Science. 2011 Sep 2;333(6047):1296-300
pubmed: 21885783
FEMS Microbiol Ecol. 2019 Mar 1;95(3):
pubmed: 30689834
Front Microbiol. 2016 Dec 02;7:1932
pubmed: 27994576
Environ Microbiol. 2008 Jun;10(6):1526-35
pubmed: 18294205
ISME J. 2013 May;7(5):962-79
pubmed: 23303369
Nature. 2010 Nov 4;468(7320):60-6
pubmed: 21048761
ISME J. 2009 Mar;3(3):283-95
pubmed: 19052630