STAMP: a multiplex sequencing method for simultaneous evaluation of mitochondrial DNA heteroplasmies and content.
Journal
NAR genomics and bioinformatics
ISSN: 2631-9268
Titre abrégé: NAR Genom Bioinform
Pays: England
ID NLM: 101756213
Informations de publication
Date de publication:
Dec 2020
Dec 2020
Historique:
received:
28
03
2020
revised:
04
08
2020
accepted:
09
10
2020
entrez:
2
11
2020
pubmed:
3
11
2020
medline:
3
11
2020
Statut:
ppublish
Résumé
Human mitochondrial genome (mtDNA) variations, such as mtDNA heteroplasmies (the co-existence of mutated and wild-type mtDNA), have received increasing attention in recent years for their clinical relevance to numerous diseases. But large-scale population studies of mtDNA heteroplasmies have been lagging due to the lack of a labor- and cost-effective method. Here, we present a novel human mtDNA sequencing method called STAMP (
Identifiants
pubmed: 33134911
doi: 10.1093/nargab/lqaa065
pii: lqaa065
pmc: PMC7573736
doi:
Types de publication
Journal Article
Langues
eng
Pagination
lqaa065Subventions
Organisme : NIAID NIH HHS
ID : R01 AI085286
Pays : United States
Informations de copyright
Published by Oxford University Press on behalf of NAR Genomics and Bioinformatics 2020.
Références
Appl Environ Microbiol. 2013 Sep;79(17):5112-20
pubmed: 23793624
Hum Mol Genet. 2013 Jan 15;22(2):384-90
pubmed: 23077218
Proc Natl Acad Sci U S A. 2014 Sep 23;111(38):E4033-42
pubmed: 25192935
Nucleic Acids Res. 2015 Feb 27;43(4):2177-87
pubmed: 25653158
Proc Natl Acad Sci U S A. 2014 Jul 22;111(29):10654-9
pubmed: 25002485
Nucleic Acids Res. 2015 Mar 11;43(5):e28
pubmed: 25414325
Curr Biol. 2015 May 4;25(9):1146-56
pubmed: 25913401
Genome Biol. 2016 Aug 26;17(1):180
pubmed: 27566673
PLoS One. 2016 Aug 09;11(8):e0160958
pubmed: 27505419
J Mol Med (Berl). 2015 Feb;93(2):177-186
pubmed: 25471480
Proc Natl Acad Sci U S A. 2015 Feb 24;112(8):2491-6
pubmed: 25675502
PLoS Genet. 2016 Oct 28;12(10):e1006391
pubmed: 27792786
Genome Biol. 2011;12(2):R18
pubmed: 21338519
Nucleic Acids Res. 2016 Jul 27;44(13):e118
pubmed: 27185891
BMC Genomics. 2017 Apr 26;18(1):326
pubmed: 28441938
Cell Rep. 2017 Dec 5;21(10):2706-2713
pubmed: 29212019
PLoS Genet. 2015 Jul 14;11(7):e1005306
pubmed: 26172475
Nat Commun. 2020 Apr 8;11(1):1740
pubmed: 32269217
Bioinformatics. 2010 Mar 1;26(5):589-95
pubmed: 20080505
BMC Genomics. 2016 Dec 12;17(1):1017
pubmed: 27955616
Genome Res. 2012 May;22(5):939-46
pubmed: 22267522
Bioinformatics. 2014 Apr 15;30(8):1073-1080
pubmed: 24389657
PLoS One. 2010 Nov 16;5(11):e14004
pubmed: 21103372
Sci Rep. 2019 Sep 10;9(1):12942
pubmed: 31506522
Electrophoresis. 2018 Nov;39(21):2785-2797
pubmed: 30151910
Free Radic Biol Med. 2011 Nov 15;51(10):1849-60
pubmed: 21911054
PLoS Curr. 2010 Sep 28;2:
pubmed: 20890398
Genome Res. 2016 Apr;26(4):417-26
pubmed: 26916109
J Genet Genomics. 2009 Mar;36(3):125-31
pubmed: 19302968
Nucleic Acids Res. 2015 Dec 2;43(21):e143
pubmed: 26187991
PLoS Genet. 2014 May 22;10(5):e1004369
pubmed: 24852434
PLoS One. 2015 Oct 21;10(10):e0139253
pubmed: 26488301
PLoS Genet. 2013;9(9):e1003794
pubmed: 24086148
Nat Methods. 2012 May 30;9(6):523-4
pubmed: 22669646
Hum Mol Genet. 2017 Aug 1;26(15):2912-2922
pubmed: 28475717
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
JAMA Cardiol. 2017 Nov 1;2(11):1247-1255
pubmed: 29049454
PLoS Genet. 2014 Sep 18;10(9):e1004620
pubmed: 25232829
BMC Genomics. 2017 Nov 21;18(1):890
pubmed: 29157198
J Pathol. 2017 Jan;241(2):236-250
pubmed: 27659608
J Mol Diagn. 2010 Jan;12(1):109-17
pubmed: 19948821
Cold Spring Harb Perspect Biol. 2013 Nov 01;5(11):a021220
pubmed: 24186072
Nat Methods. 2012 Feb 05;9(3):270-2
pubmed: 22306810
Proc Natl Acad Sci U S A. 2014 Oct 28;111(43):15474-9
pubmed: 25313049
Genome Biol. 2015 Sep 21;16:178
pubmed: 26387834