ABC-F translation factors: from antibiotic resistance to immune response.
ABC ATPase
ABC-F protein family
antibiotic resistance
immune response
infection
mRNA translation
protein synthesis
Journal
FEBS letters
ISSN: 1873-3468
Titre abrégé: FEBS Lett
Pays: England
ID NLM: 0155157
Informations de publication
Date de publication:
03 2021
03 2021
Historique:
revised:
13
10
2020
received:
18
07
2020
accepted:
15
10
2020
pubmed:
3
11
2020
medline:
21
7
2021
entrez:
2
11
2020
Statut:
ppublish
Résumé
Energy-dependent translational throttle A (EttA) from Escherichia coli is a paradigmatic ABC-F protein that controls the first step in polypeptide elongation on the ribosome according to the cellular energy status. Biochemical and structural studies have established that ABC-F proteins generally function as translation factors that modulate the conformation of the peptidyl transferase center upon binding to the ribosomal tRNA exit site. These factors, present in both prokaryotes and eukaryotes but not in archaea, use related molecular mechanisms to modulate protein synthesis for heterogenous purposes, ranging from antibiotic resistance and rescue of stalled ribosomes to modulation of the mammalian immune response. Here, we review the canonical studies characterizing the phylogeny, regulation, ribosome interactions, and mechanisms of action of the bacterial ABC-F proteins, and discuss the implications of these studies for the molecular function of eukaryotic ABC-F proteins, including the three human family members.
Identifiants
pubmed: 33135152
doi: 10.1002/1873-3468.13984
pmc: PMC8609467
mid: NIHMS1645297
doi:
Substances chimiques
ATP-Binding Cassette Transporters
0
Escherichia coli Proteins
0
EttA protein, E coli
0
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Review
Langues
eng
Sous-ensembles de citation
IM
Pagination
675-706Subventions
Organisme : NIGMS NIH HHS
ID : R01 GM120579
Pays : United States
Organisme : NIGMS NIH HHS
ID : U54 GM075026
Pays : United States
Organisme : NIGMS NIH HHS
ID : U54 GM094597
Pays : United States
Informations de copyright
© 2020 Federation of European Biochemical Societies.
Références
Antimicrob Agents Chemother. 2015 Feb;59(2):1360-4
pubmed: 25512423
Vet Microbiol. 2017 Mar;201:252-256
pubmed: 28284617
Biochem J. 2008 Jan 1;409(1):223-31
pubmed: 17894550
Eur J Med Chem. 2019 Nov 15;182:111662
pubmed: 31499358
BMC Biol. 2004 Apr 01;2:4
pubmed: 15059283
RNA. 2019 May;25(5):600-606
pubmed: 30733327
J Antimicrob Chemother. 2019 Jul 1;74(7):1771-1775
pubmed: 30891598
Proc Natl Acad Sci U S A. 2015 Oct 27;112(43):E5805-14
pubmed: 26464510
Genome Res. 2001 Jul;11(7):1156-66
pubmed: 11435397
Protein Sci. 2019 Apr;28(4):684-693
pubmed: 30746819
Microbiology (Reading). 2016 Jan;162(1):46-52
pubmed: 26531240
Cell. 2012 Oct 26;151(3):508-20
pubmed: 23101624
Mol Microbiol. 2004 Dec;54(5):1287-94
pubmed: 15554968
J Biol Chem. 2006 Mar 10;281(10):6850-9
pubmed: 16407313
Mol Cell. 2014 Nov 6;56(3):446-452
pubmed: 25306253
J Bacteriol. 2005 Sep;187(17):5946-54
pubmed: 16109936
Cell. 2017 Nov 2;171(4):890-903.e18
pubmed: 29107329
Int J Med Microbiol. 2014 Jan;304(1):44-50
pubmed: 24119565
Nucleic Acids Res. 2018 Apr 20;46(7):3753-3763
pubmed: 29415157
J Biol Chem. 1983 Oct 25;258(20):12702-6
pubmed: 6195156
Hum Pathol. 2007 Jan;38(1):134-9
pubmed: 16996567
EMBO Rep. 2010 Mar;11(3):214-9
pubmed: 20062004
Structure. 2001 Jul 3;9(7):571-86
pubmed: 11470432
J Biol Chem. 2008 Sep 12;283(37):25332-25339
pubmed: 18562322
Biochemistry. 1972 Oct 24;11(22):4037-44
pubmed: 4563926
Cell Rep. 2014 Oct 23;9(2):469-75
pubmed: 25310980
Mol Biol Cell. 2020 Jun 15;31(13):1324-1345
pubmed: 32320318
J Antimicrob Chemother. 1993 Mar;31 Suppl C:1-9
pubmed: 7683018
Proc Natl Acad Sci U S A. 2011 Jun 28;108(26):10496-501
pubmed: 21670252
J Biol Chem. 2019 Oct 11;294(41):14937-14952
pubmed: 31413116
Biol Chem. 2019 Dec 18;401(1):47-61
pubmed: 31665102
Nucleic Acids Res. 2017 Sep 29;45(17):10284-10292
pubmed: 28973455
Nat Rev Mol Cell Biol. 2019 Jun;20(6):368-383
pubmed: 30940912
EMBO J. 1982;1(8):945-51
pubmed: 6329717
Annu Rev Biochem. 2018 Jun 20;87:451-478
pubmed: 29570352
Nature. 2019 Jun;570(7762):538-542
pubmed: 31189955
Biomol NMR Assign. 2012 Oct;6(2):197-200
pubmed: 22287065
Microbiol Mol Biol Rev. 2008 Jun;72(2):317-64, table of contents
pubmed: 18535149
FEMS Microbiol Lett. 2013 Mar;340(2):73-85
pubmed: 23289536
Cell. 2005 Apr 22;121(2):257-70
pubmed: 15851032
Nat Commun. 2014 Mar 24;5:3501
pubmed: 24662426
Proc Natl Acad Sci U S A. 1971 Apr;68(4):856-60
pubmed: 5279527
Nat Microbiol. 2020 Apr;5(4):554-561
pubmed: 32094585
Biomolecules. 2019 Sep 04;9(9):
pubmed: 31487824
J Mol Biol. 1999 Oct 22;293(2):381-99
pubmed: 10529352
Mol Microbiol. 2009 Feb;71(4):811-24
pubmed: 19170872
Annu Rev Microbiol. 2018 Sep 08;72:185-207
pubmed: 29906204
Int J Antimicrob Agents. 2018 Mar;51(3):283-298
pubmed: 28668674
Immunogenetics. 2007 Jan;59(1):45-52
pubmed: 17119950
Sci Rep. 2016 Dec 13;6:39004
pubmed: 27958389
Front Microbiol. 2017 May 05;8:803
pubmed: 28529506
Antimicrob Agents Chemother. 2002 Jun;46(6):1845-50
pubmed: 12019099
Trends Microbiol. 2013 Apr;21(4):174-80
pubmed: 23419217
Cell Rep. 2019 Jul 16;28(3):723-734.e6
pubmed: 31315050
J Biol Chem. 2009 Sep 4;284(36):24061-73
pubmed: 19570978
Cell. 2000 Jun 23;101(7):789-800
pubmed: 10892749
Nat Immunol. 2013 Feb;14(2):179-85
pubmed: 23263557
Clin Microbiol Rev. 2007 Jan;20(1):79-114
pubmed: 17223624
Proc Natl Acad Sci U S A. 2009 Jun 9;106(23):9362-7
pubmed: 19474294
Biochem J. 2015 Apr 15;467(2):217-29
pubmed: 25597744
Immunity. 2019 Feb 19;50(2):418-431.e6
pubmed: 30770245
J Mol Biol. 2009 May 29;389(1):146-56
pubmed: 19362093
Mol Cell. 2002 Jul;10(1):139-49
pubmed: 12150914
Nat Rev Microbiol. 2005 Nov;3(11):870-81
pubmed: 16261170
Proc Natl Acad Sci U S A. 2010 Jun 15;107(24):10854-9
pubmed: 20534490
Mol Cell Biol. 1997 Aug;17(8):4474-89
pubmed: 9234705
Mol Cell. 2002 Jul;10(1):117-28
pubmed: 12150912
Microbiol Rev. 1996 Jun;60(2):366-85
pubmed: 8801438
Nat Struct Mol Biol. 2012 Feb 05;19(3):291-8
pubmed: 22307053
Front Microbiol. 2011 Sep 28;2:203
pubmed: 22046172
J Biol Chem. 1981 Oct 10;256(19):9999-10004
pubmed: 6456269
Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4291-6
pubmed: 17360517
Structure. 2018 Sep 4;26(9):1259-1265.e3
pubmed: 30017566
Proc Natl Acad Sci U S A. 2011 Feb 22;108(8):3228-33
pubmed: 21292982
Mol Cell Biol. 2005 Nov;25(22):9859-73
pubmed: 16260602
Mol Oncol. 2020 Feb;14(2):447-461
pubmed: 31758671
Vet Microbiol. 2017 Oct;210:43-48
pubmed: 29103695
J Mol Biol. 2000 Dec 1;304(3):471-81
pubmed: 11090288
Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13339-44
pubmed: 18757750
BMC Microbiol. 2019 Jul 12;19(1):162
pubmed: 31299904
Proc Natl Acad Sci U S A. 2014 Jul 8;111(27):9804-9
pubmed: 24961372
Ann N Y Acad Sci. 2011 Dec;1241:71-81
pubmed: 22191527
Nat Chem Biol. 2020 Mar;16(3):310-317
pubmed: 31844301
Brief Funct Genomics. 2010 Mar;9(2):178-89
pubmed: 20352660
Antimicrob Agents Chemother. 2010 Dec;54(12):5337-43
pubmed: 20837751
PLoS Pathog. 2013;9(6):e1003403
pubmed: 23785281
Nucleic Acids Res. 2020 Jan 10;48(1):212-230
pubmed: 31665437
Proc Natl Acad Sci U S A. 2014 Nov 11;111(45):15958-63
pubmed: 25349425
J Clin Microbiol. 2004 Aug;42(8):3570-4
pubmed: 15297499
Mol Biol Cell. 2015 Jun 15;26(12):2311-20
pubmed: 25904329
Nucleic Acids Res. 2020 Sep 4;48(15):8445-8460
pubmed: 32644157
EMBO J. 2020 May 4;39(9):e103788
pubmed: 32064661
Nat Rev Microbiol. 2020 Nov;18(11):637-648
pubmed: 32587401
Nucleic Acids Res. 2017 Sep 19;45(16):9573-9582
pubmed: 28934499
Front Microbiol. 2019 Dec 10;10:2800
pubmed: 31921008
Proc Natl Acad Sci U S A. 2015 Apr 28;112(17):5401-6
pubmed: 25870267
Nature. 2012 Feb 22;482(7386):501-6
pubmed: 22358840
J Biol Chem. 2000 Nov 3;275(44):34131-9
pubmed: 10931828
Cell Rep. 2016 Aug 16;16(7):1789-99
pubmed: 27498876
J Med Chem. 2008 Jun 26;51(12):3353-6
pubmed: 18494460
Antimicrob Agents Chemother. 2014 Sep;58(9):5269-79
pubmed: 24957822
Microb Drug Resist. 2018 Oct;24(8):1089-1097
pubmed: 29406792
Nat Struct Mol Biol. 2014 Feb;21(2):152-9
pubmed: 24389465
EMBO J. 2000 Apr 17;19(8):1887-99
pubmed: 10775272
J Mol Biol. 2003 Jul 25;330(5):1061-75
pubmed: 12860128
Protein Cell. 2017 Jun;8(6):467-470
pubmed: 28405828
Res Microbiol. 2019 Nov - Dec;170(8):435-447
pubmed: 31563533
Life Sci Alliance. 2018 Jun 14;1(3):
pubmed: 30198020
PLoS One. 2011 Apr 27;6(4):e18510
pubmed: 21556145
J Biol Chem. 2007 May 11;282(19):14598-607
pubmed: 17355973
J Struct Biol. 2012 Dec;180(3):577-84
pubmed: 22995754
Wiley Interdiscip Rev RNA. 2017 Jan;8(1):
pubmed: 27193249
Nucleic Acids Res. 2019 Sep 19;47(16):8807-8820
pubmed: 31299085
Res Microbiol. 2008 Nov-Dec;159(9-10):671-7
pubmed: 18848624
J Am Chem Soc. 2017 Sep 27;139(38):13304-13307
pubmed: 28902996
Nat Struct Mol Biol. 2014 Feb;21(2):143-51
pubmed: 24389466
Int J Antimicrob Agents. 2012 Oct;40(4):306-12
pubmed: 22901706
J Antimicrob Chemother. 2005 Dec;56(6):1179-80
pubmed: 16223938
Res Microbiol. 2001 Apr-May;152(3-4):401-9
pubmed: 11421287
Plasmid. 2018 Sep;99:89-98
pubmed: 30253132
Mol Biol Rep. 2013 Oct;40(10):5759-67
pubmed: 24052230
PLoS One. 2017 May 19;12(5):e0175918
pubmed: 28542262
Nat Struct Mol Biol. 2011 Feb;18(2):191-7
pubmed: 21240268
Cold Spring Harb Perspect Med. 2017 Jan 3;7(1):
pubmed: 27742734
Biochim Biophys Acta. 2010 Apr;1804(4):755-61
pubmed: 19948254
Mol Cell. 2017 Nov 2;68(3):504-514.e7
pubmed: 29107534
J Biol Chem. 1973 Nov 10;248(21):7580-7
pubmed: 4583357
Proc Natl Acad Sci U S A. 2018 Dec 11;115(50):12757-12762
pubmed: 30459277
Nat Struct Mol Biol. 2015 Apr;22(4):336-41
pubmed: 25775265
Nucleic Acids Res. 2012 Jan;40(Database issue):D290-301
pubmed: 22127870
Mol Cell. 2010 Jan 29;37(2):196-210
pubmed: 20122402
Cell Microbiol. 2007 Mar;9(3):680-93
pubmed: 17064289
Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):12150-12155
pubmed: 27791002
Antimicrob Agents Chemother. 2006 Nov;50(11):3875-81
pubmed: 16940066
Genomics. 1998 Oct 15;53(2):137-45
pubmed: 9790762
Proc Natl Acad Sci U S A. 2018 Sep 4;115(36):8978-8983
pubmed: 30126986
Proc Natl Acad Sci U S A. 2010 Oct 5;107(40):17152-7
pubmed: 20876128
Nature. 2006 Oct 12;443(7112):663-8
pubmed: 16929303
Proc Natl Acad Sci U S A. 2010 Oct 5;107(40):17158-63
pubmed: 20876130
EMBO J. 1995 Jul 3;14(13):3184-99
pubmed: 7621831
Mol Microbiol. 1990 Jul;4(7):1207-14
pubmed: 2233255
Annu Rev Microbiol. 1993;47:855-74
pubmed: 8257118
Nature. 2019 Jul;571(7766):580-583
pubmed: 31316210
J Antimicrob Chemother. 2013 Jun;68(6):1251-5
pubmed: 23386262
Cell. 2011 Apr 1;145(1):54-66
pubmed: 21458667
Nature. 2007 Nov 22;450(7169):515-21
pubmed: 18033289
J Mol Biol. 2019 Aug 23;431(18):3568-3590
pubmed: 30597160
J Antimicrob Chemother. 2019 Dec 1;74(12):3445-3452
pubmed: 31504566
J Antimicrob Chemother. 2012 Jan;67(1):91-100
pubmed: 22001176
Crit Rev Microbiol. 2017 Feb;43(1):1-30
pubmed: 27786586
Nat Struct Mol Biol. 2014 Sep;21(9):787-93
pubmed: 25132179
Antimicrob Agents Chemother. 2008 Mar;52(3):866-74
pubmed: 18086834
BMC Plant Biol. 2018 Nov 12;18(1):274
pubmed: 30419826
mBio. 2016 Mar 22;7(2):e01975
pubmed: 27006457
Front Microbiol. 2018 Nov 30;9:2928
pubmed: 30555448
J Antimicrob Chemother. 2013 Feb;68(2):473-5
pubmed: 23047809
J Virol. 2012 Aug;86(15):7953-63
pubmed: 22623793
Mol Cell. 2019 May 2;74(3):481-493.e6
pubmed: 30904393
Cell. 2016 Nov 17;167(5):1229-1240.e15
pubmed: 27863242
PLoS One. 2015 Feb 19;10(2):e0116254
pubmed: 25695510
Curr Opin Chem Biol. 2005 Dec;9(6):594-602
pubmed: 16226486
Nature. 2001 Oct 25;413(6858):814-21
pubmed: 11677599
Biochimie. 1999 Dec;81(12):1097-108
pubmed: 10607404
BMC Genomics. 2013 Jan 16;14:6
pubmed: 23324493
FEMS Microbiol Lett. 2008 May;282(2):147-59
pubmed: 18399991
Proc Natl Acad Sci U S A. 2018 May 15;115(20):5157-5162
pubmed: 29712846
J Cell Physiol. 2012 Oct;227(10):3498-510
pubmed: 22252987