Prediction of miRNA-disease associations based on Weighted [Formula: see text]-Nearest known neighbors and network consistency projection.


Journal

Journal of bioinformatics and computational biology
ISSN: 1757-6334
Titre abrégé: J Bioinform Comput Biol
Pays: Singapore
ID NLM: 101187344

Informations de publication

Date de publication:
02 2021
Historique:
pubmed: 6 11 2020
medline: 25 11 2021
entrez: 5 11 2020
Statut: ppublish

Résumé

MicroRNAs (miRNA) are a type of non-coding RNA molecules that are effective on the formation and the progression of many different diseases. Various researches have reported that miRNAs play a major role in the prevention, diagnosis, and treatment of complex human diseases. In recent years, researchers have made a tremendous effort to find the potential relationships between miRNAs and diseases. Since the experimental techniques used to find that new miRNA-disease relationships are time-consuming and expensive, many computational techniques have been developed. In this study, Weighted [Formula: see text]-Nearest Known Neighbors and Network Consistency Projection techniques were suggested to predict new miRNA-disease relationships using various types of knowledge such as known miRNA-disease relationships, functional similarity of miRNA, and disease semantic similarity. An average AUC of 0.9037 and 0.9168 were calculated in our method by 5-fold and leave-one-out cross validation, respectively. Case studies of breast, lung, and colon neoplasms were applied to prove the performance of our proposed technique, and the results confirmed the predictive reliability of this method. Therefore, reported experimental results have shown that our proposed method can be used as a reliable computational model to reveal potential relationships between miRNAs and diseases.

Identifiants

pubmed: 33148093
doi: 10.1142/S0219720020500419
doi:

Substances chimiques

MicroRNAs 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

2050041

Auteurs

Ahmet Toprak (A)

Department of Electricity and Energy, Bozkır Vocational School, Selcuk University, Konya, Turkey.

Esma Eryilmaz (E)

Department of Biomedical Engineering, Faculty of Technology, Selcuk University, Konya, Turkey.

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Classifications MeSH