Viral rhodopsins 1 are an unique family of light-gated cation channels.
Animals
Calcium
/ metabolism
Cations
Cells, Cultured
Channelrhodopsins
/ metabolism
HEK293 Cells
Humans
Ion Channel Gating
Light
Neurons
/ metabolism
Phylogeny
Phytoplankton
/ virology
Protein Conformation
Rats, Wistar
Rhodopsin
/ chemistry
Structure-Activity Relationship
Viral Proteins
/ chemistry
X-Ray Diffraction
Journal
Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555
Informations de publication
Date de publication:
11 11 2020
11 11 2020
Historique:
received:
22
07
2020
accepted:
07
10
2020
entrez:
12
11
2020
pubmed:
13
11
2020
medline:
15
12
2020
Statut:
epublish
Résumé
Phytoplankton is the base of the marine food chain as well as oxygen and carbon cycles and thus plays a global role in climate and ecology. Nucleocytoplasmic Large DNA Viruses that infect phytoplankton organisms and regulate the phytoplankton dynamics encompass genes of rhodopsins of two distinct families. Here, we present a functional and structural characterization of two proteins of viral rhodopsin group 1, OLPVR1 and VirChR1. Functional analysis of VirChR1 shows that it is a highly selective, Na
Identifiants
pubmed: 33177509
doi: 10.1038/s41467-020-19457-7
pii: 10.1038/s41467-020-19457-7
pmc: PMC7659345
doi:
Substances chimiques
Cations
0
Channelrhodopsins
0
Viral Proteins
0
Rhodopsin
9009-81-8
Calcium
SY7Q814VUP
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
5707Références
Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):235-42
pubmed: 21460441
Biol Direct. 2012 Oct 04;7:34
pubmed: 23036091
Proc Natl Acad Sci U S A. 2009 Jul 28;106(30):12317-22
pubmed: 19590013
Sci Rep. 2015 Nov 05;5:16273
pubmed: 26537835
FEMS Microbiol Ecol. 2017 Jan 1;93(1):
pubmed: 27815287
Bioinformatics. 2006 Jul 1;22(13):1658-9
pubmed: 16731699
Nat Struct Mol Biol. 2015 May;22(5):390-5
pubmed: 25849142
Acta Crystallogr D Biol Crystallogr. 2010 Jan;66(Pt 1):22-5
pubmed: 20057045
Philos Trans R Soc Lond B Biol Sci. 2009 Oct 12;364(1531):2795-808
pubmed: 19720645
Nucleic Acids Res. 2016 Jul 8;44(W1):W242-5
pubmed: 27095192
Biochim Biophys Acta. 2000 Aug 30;1460(1):75-94
pubmed: 10984592
Environ Microbiol. 2012 Sep;14(9):2253-71
pubmed: 22360532
Science. 2015 Aug 7;349(6248):647-50
pubmed: 26113638
Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):355-67
pubmed: 21460454
Science. 2014 Apr 25;344(6182):420-4
pubmed: 24763591
Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):13940-5
pubmed: 14615590
Viruses. 2018 Aug 26;10(9):
pubmed: 30149667
Nat Neurosci. 2009 Feb;12(2):229-34
pubmed: 19079251
Plant Physiol. 2009 Sep;151(1):347-66
pubmed: 19641026
Bioinformatics. 2015 May 15;31(10):1674-6
pubmed: 25609793
Sci Adv. 2019 Apr 10;5(4):eaav2671
pubmed: 30989112
Methods Enzymol. 2009;464:211-31
pubmed: 19903557
Proc Natl Acad Sci U S A. 2019 May 7;116(19):9380-9389
pubmed: 31004059
Nucleic Acids Res. 2017 Jul 3;45(W1):W320-W324
pubmed: 28387820
Acta Crystallogr D Biol Crystallogr. 2013 Oct;69(Pt 10):1965-80
pubmed: 24100316
Bioinformatics. 2014 Aug 1;30(15):2114-20
pubmed: 24695404
Appl Environ Microbiol. 1987 Apr;53(4):879-86
pubmed: 11536572
Structure. 2012 Jun 6;20(6):967-76
pubmed: 22681902
Nat New Biol. 1971 Sep 29;233(39):149-52
pubmed: 4940442
Science. 2015 Aug 7;349(6248):590-1
pubmed: 26250674
Nat Rev Neurosci. 2016 Mar;17(3):139-45
pubmed: 26865019
Nat Rev Microbiol. 2012 Jul 02;10(8):563-74
pubmed: 22751485
Bioinformatics. 2012 Apr 15;28(8):1166-7
pubmed: 22368248
Cell. 2010 Apr 2;141(1):154-165
pubmed: 20303157
J Mol Biol. 1999 Aug 27;291(4):899-911
pubmed: 10452895
Proc Natl Acad Sci U S A. 2013 Jul 30;110(31):12631-6
pubmed: 23872846
Nat Commun. 2019 Oct 30;10(1):4939
pubmed: 31666521
Nat Methods. 2014 Mar;11(3):338-46
pubmed: 24509633
Sci Adv. 2017 Sep 22;3(9):e1603187
pubmed: 28948217
BMC Bioinformatics. 2015 Oct 06;16:322
pubmed: 26445311
J Mol Biol. 2004 May 14;338(5):1027-36
pubmed: 15111065
Proc Natl Acad Sci U S A. 1980 Jan;77(1):323-7
pubmed: 6928624
Curr Opin Virol. 2018 Dec;33:81-88
pubmed: 30114664
Curr Opin Struct Biol. 2019 Aug;57:118-126
pubmed: 30954887
Nature. 2015 May 7;521(7550):48-53
pubmed: 25849775
J Comput Chem. 2008 Aug;29(11):1859-65
pubmed: 18351591
Nature. 2002 Oct 3;419(6906):484-7
pubmed: 12368857
Photochem Photobiol Sci. 2010 Feb;9(2):194-8
pubmed: 20126794
Proc Natl Acad Sci U S A. 2004 Apr 13;101(15):5318-24
pubmed: 14762169
Proc Natl Acad Sci U S A. 2011 Jul 12;108(28):11435-9
pubmed: 21709261
Nat Neurosci. 2011 Apr;14(4):513-8
pubmed: 21399632
Sci Adv. 2019 Aug 07;5(8):eaaw8855
pubmed: 31457093
Proc Natl Acad Sci U S A. 2017 Nov 7;114(45):E9512-E9519
pubmed: 29078348
Nat Methods. 2007 Sep;4(9):741-6
pubmed: 17721542
Plant Cell. 2019 Apr;31(4):886-910
pubmed: 30862615
Exp Physiol. 2011 Jan;96(1):19-25
pubmed: 20621963
Chem Rev. 2014 Jan 8;114(1):126-63
pubmed: 24364740
Nature. 2005 Nov 3;438(7064):86-9
pubmed: 16222247
Proc Natl Acad Sci U S A. 2002 Jun 25;99(13):8689-94
pubmed: 12060707
J Cell Sci. 2005 May 1;118(Pt 9):1935-43
pubmed: 15827083
Science. 2017 Nov 24;358(6366):
pubmed: 29170206
Proc Natl Acad Sci U S A. 2011 Apr 12;108(15):6163-8
pubmed: 21444812
Biochemistry. 2005 Feb 15;44(6):1800-6
pubmed: 15697205
Genome Res. 2004 Jun;14(6):1188-90
pubmed: 15173120
Nat Rev Neurosci. 2007 Aug;8(8):577-81
pubmed: 17643087
Virology. 2015 May;479-480:38-45
pubmed: 25766639
J Mol Biol. 2004 Sep 10;342(2):571-83
pubmed: 15327956
Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2126-32
pubmed: 15572765
Nature. 2018 Sep;561(7723):349-354
pubmed: 30158697
Virology. 2014 Oct;466-467:103-11
pubmed: 25441713
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21
pubmed: 20124702
Nat Commun. 2018 Sep 26;9(1):3949
pubmed: 30258177
Elife. 2019 Jan 07;8:
pubmed: 30614787
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):125-32
pubmed: 20124692
Neuron. 2013 Jul 24;79(2):241-53
pubmed: 23889931
Cell. 2010 Sep 17;142(6):902-13
pubmed: 20850012
Nat Methods. 2015 Jan;12(1):59-60
pubmed: 25402007
Nucleic Acids Res. 2012 Jan;40(Database issue):D370-6
pubmed: 21890895
Nat Methods. 2007 Feb;4(2):139-41
pubmed: 17195846
PLoS One. 2010 Mar 10;5(3):e9490
pubmed: 20224823
Subcell Biochem. 2018;87:19-56
pubmed: 29464556
Nat Commun. 2020 May 1;11(1):2137
pubmed: 32358514
Proc Natl Acad Sci U S A. 2019 Oct 8;116(41):20574-20583
pubmed: 31548428
Proc Natl Acad Sci U S A. 2005 May 10;102(19):6879-83
pubmed: 15860584
FEBS Lett. 2003 Sep 18;552(1):28-34
pubmed: 12972148
Biochim Biophys Acta. 2014 May;1837(5):606-13
pubmed: 24055285
Science. 2000 Sep 15;289(5486):1902-6
pubmed: 10988064
Nature. 2012 Jan 22;482(7385):369-74
pubmed: 22266941
BMC Bioinformatics. 2010 Mar 08;11:119
pubmed: 20211023
Proc Natl Acad Sci U S A. 1996 Dec 10;93(25):14532-5
pubmed: 8962086
EMBO J. 2018 Dec 14;37(24):
pubmed: 30396994
Biophys J. 2015 Oct 6;109(7):1446-53
pubmed: 26445445
Biophys J. 1996 Nov;71(5):2329-45
pubmed: 8913574
Nature. 2014 Feb 13;506(7487):191-6
pubmed: 24413399
Nature. 2018 Sep;561(7723):343-348
pubmed: 30158696
Sci Rep. 2017 Mar 03;7:43358
pubmed: 28256618
Biochim Biophys Acta. 2011 Feb;1808(2):561-71
pubmed: 20546700
Nature. 2009 Sep 10;461(7261):258-262
pubmed: 19710652
BMC Struct Biol. 2008 Nov 14;8:49
pubmed: 19014592
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W320-4
pubmed: 24753421
Science. 2014 Apr 25;344(6182):409-12
pubmed: 24674867