Illuminating an Ecological Blackbox: Using High Throughput Sequencing to Characterize the Plant Virome Across Scales.

high throughput sequencing historical advances opportunities and challenges plant virome virus ecology and evolution

Journal

Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977

Informations de publication

Date de publication:
2020
Historique:
received: 30 06 2020
accepted: 24 09 2020
entrez: 12 11 2020
pubmed: 13 11 2020
medline: 13 11 2020
Statut: epublish

Résumé

The ecology of plant viruses began to be explored at the end of the 19th century. Since then, major advances have revealed mechanisms of virus-host-vector interactions in various environments. These advances have been accelerated by new technlogies for virus detection and characterization, most recently including high throughput sequencing (HTS). HTS allows investigators, for the first time, to characterize all or nearly all viruses in a sample without

Identifiants

pubmed: 33178159
doi: 10.3389/fmicb.2020.578064
pmc: PMC7596190
doi:

Types de publication

Journal Article Review

Langues

eng

Pagination

578064

Informations de copyright

Copyright © 2020 Maclot, Candresse, Filloux, Malmstrom, Roumagnac, van der Vlugt and Massart.

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Auteurs

François Maclot (F)

Plant Pathology Laboratory, Terra-Gembloux Agro-Bio Tech, Liège University, Gembloux, Belgium.

Thierry Candresse (T)

Univ. Bordeaux, INRAE, UMR BFP, Villenave d'Ornon, France.

Denis Filloux (D)

CIRAD, BGPI, Montpellier, France.
BGPI, INRAE, CIRAD, Institut Agro, Montpellier University, Montpellier, France.

Carolyn M Malmstrom (CM)

Department of Plant Biology and Graduate Program in Ecology, Evolution and Behavior, Michigan State University, East Lansing, MI, United States.

Philippe Roumagnac (P)

CIRAD, BGPI, Montpellier, France.
BGPI, INRAE, CIRAD, Institut Agro, Montpellier University, Montpellier, France.

René van der Vlugt (R)

Laboratory of Virology, Wageningen University and Research Centre (WUR-PRI), Wageningen, Netherlands.

Sébastien Massart (S)

Plant Pathology Laboratory, Terra-Gembloux Agro-Bio Tech, Liège University, Gembloux, Belgium.

Classifications MeSH