Connecting the data landscape of long-term ecological studies: The SPI-Birds data hub.

FAIR data birds data standards database long-term studies meta-data standards research network

Journal

The Journal of animal ecology
ISSN: 1365-2656
Titre abrégé: J Anim Ecol
Pays: England
ID NLM: 0376574

Informations de publication

Date de publication:
09 2021
Historique:
received: 05 08 2020
accepted: 01 11 2020
pubmed: 19 11 2020
medline: 29 10 2021
entrez: 18 11 2020
Statut: ppublish

Résumé

The integration and synthesis of the data in different areas of science is drastically slowed and hindered by a lack of standards and networking programmes. Long-term studies of individually marked animals are not an exception. These studies are especially important as instrumental for understanding evolutionary and ecological processes in the wild. Furthermore, their number and global distribution provides a unique opportunity to assess the generality of patterns and to address broad-scale global issues (e.g. climate change). To solve data integration issues and enable a new scale of ecological and evolutionary research based on long-term studies of birds, we have created the SPI-Birds Network and Database (www.spibirds.org)-a large-scale initiative that connects data from, and researchers working on, studies of wild populations of individually recognizable (usually ringed) birds. Within year and a half since the establishment, SPI-Birds has recruited over 120 members, and currently hosts data on almost 1.5 million individual birds collected in 80 populations over 2,000 cumulative years, and counting. SPI-Birds acts as a data hub and a catalogue of studied populations. It prevents data loss, secures easy data finding, use and integration and thus facilitates collaboration and synthesis. We provide community-derived data and meta-data standards and improve data integrity guided by the principles of Findable, Accessible, Interoperable and Reusable (FAIR), and aligned with the existing metadata languages (e.g. ecological meta-data language). The encouraging community involvement stems from SPI-Bird's decentralized approach: research groups retain full control over data use and their way of data management, while SPI-Birds creates tailored pipelines to convert each unique data format into a standard format. We outline the lessons learned, so that other communities (e.g. those working on other taxa) can adapt our successful model. Creating community-specific hubs (such as ours, COMADRE for animal demography, etc.) will aid much-needed large-scale ecological data integration.

Identifiants

pubmed: 33205462
doi: 10.1111/1365-2656.13388
pmc: PMC8518542
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

2147-2160

Informations de copyright

© 2020 The Authors. Journal of Animal Ecology published by John Wiley & Sons Ltd on behalf of British Ecological Society.

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Auteurs

Antica Culina (A)

Department of Animal Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.

Frank Adriaensen (F)

Department of Biology, University of Antwerp, Antwerp, Belgium.

Liam D Bailey (LD)

Department of Animal Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.
Department of Evolutionary Genetics, Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany.

Malcolm D Burgess (MD)

RSPB Centre for Conservation Science, The Lodge, Sandy, UK.
Centre for Research in Animal Behaviour, University of Exeter, Exeter, UK.

Anne Charmantier (A)

CEFE, University of Montpellier, CNRS, EPHE, IRD, University of Paul Valéry Montpellier 3, Montpellier, France.

Ella F Cole (EF)

Edward Grey Institute, Department of Zoology, University of Oxford, Oxford, UK.

Tapio Eeva (T)

Department of Biology, University of Turku, Turku, Finland.
Kevo Subarctic Research Institute, University of Turku, Turku, Finland.

Erik Matthysen (E)

Department of Biology, University of Antwerp, Antwerp, Belgium.

Chloé R Nater (CR)

Centre for Biodiversity Dynamics, Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway.

Ben C Sheldon (BC)

Edward Grey Institute, Department of Zoology, University of Oxford, Oxford, UK.

Bernt-Erik Saether (BE)

Centre for Biodiversity Dynamics, Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway.

Stefan J G Vriend (SJG)

Centre for Biodiversity Dynamics, Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway.

Zuzana Zajkova (Z)

Department of Animal Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.

Peter Adamík (P)

Department of Zoology, Faculty of Science, Palacký University, Olomouc, Czech Republic.

Lucy M Aplin (LM)

Cognitive and Cultural Ecology Research Group, Max Planck Institute of Animal Behavior, Radolfzell, Germany.
Centre for the Advanced Study of Collective Behaviour, University of Konstanz, Konstanz, Germany.

Elena Angulo (E)

Department of Ethology and Biodiversity Conservation, Estación Biológica de Doñana-CSIC, Seville, Spain.

Alexandr Artemyev (A)

Institute of Biology of the Karelian Research Centre of the Russian Academy of Sciences, Petrozavodsk, Russia.

Emilio Barba (E)

Cavanilles Institute of Biodiversity and Evolutionary Biology, University of Valencia, Paterna, Spain.

Sanja Barišić (S)

Institute of Ornithology, Croatian Academy of Sciences and Arts, Zagreb, Croatia.

Eduardo Belda (E)

Universitat Politècnica de València, Valencia, Spain.

Cemal Can Bilgin (CC)

Biodiversity and Conservation Lab, Department of Biology, METU, Ankara, Turkey.

Josefa Bleu (J)

Université de Strasbourg, CNRS, IPHC UMR 7178, Strasbourg, France.

Christiaan Both (C)

Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen.

Sandra Bouwhuis (S)

Institute of Avian Research, Wilhelmshaven, Germany.

Claire J Branston (CJ)

Institute of Biodiversity, Animal Health & Comparative Medicine, University of Glasgow, Glasgow, UK.

Juli Broggi (J)

Department of Ethology and Biodiversity Conservation, Estación Biológica de Doñana-CSIC, Seville, Spain.

Terry Burke (T)

Department of Animal & Plant Sciences, University of Sheffield, Sheffield, UK.

Andrey Bushuev (A)

Department of Vertebrate Zoology, Faculty of Biology, Lomonosov Moscow State Univ, Moscow, Russia.

Carlos Camacho (C)

Department of Biology, Lund University, Lund, Sweden.

Daniela Campobello (D)

Stazione Ornitologica, Monreale, Italy.
Department STEBICEF, Università degli Studi di Palermo, Palermo, Italy.

David Canal (D)

Centre for Ecological Research, Institute of Ecology and Botany, Vácrátót, Hungary.

Alejandro Cantarero (A)

Department of Biology, University of Turku, Turku, Finland.

Samuel P Caro (SP)

CEFE, University of Montpellier, CNRS, EPHE, IRD, University of Paul Valéry Montpellier 3, Montpellier, France.

Maxime Cauchoix (M)

Station d'Ecologie Théorique et Expérimentale du CNRS (UMR5321), Moulis, France.

Alexis Chaine (A)

Station d'Ecologie Théorique et Expérimentale du CNRS (UMR5321), Moulis, France.

Mariusz Cichoń (M)

Institute of Environmental Sciences, Jagiellonian University, Kraków.

Davor Ćiković (D)

Institute of Ornithology, Croatian Academy of Sciences and Arts, Zagreb, Croatia.

Camillo A Cusimano (CA)

Stazione Ornitologica, Monreale, Italy.

Caroline Deimel (C)

Evolutionary Physiology Group, Max Planck Institute for Ornithology, Seewiesen, Germany.

André A Dhondt (AA)

Department of Biology, University of Antwerp, Antwerp, Belgium.
Laboratory of Ornithology, Cornell University, Ithaca, NY, USA.

Niels J Dingemanse (NJ)

Behavioural Ecology, Department of Biology, Ludwig-Maximilians University of Munich, Planegg-Martinsried, Germany.

Blandine Doligez (B)

CNRS, Department of Biometry & Evolutionary Biology, University Lyon 1, University of Lyon, Villeurbanne, France.
Department of Ecology and Genetics and Animal Ecology, Uppsala University, Uppsala, Sweden.

Davide M Dominoni (DM)

Institute of Biodiversity, Animal Health & Comparative Medicine, University of Glasgow, Glasgow, UK.

Claire Doutrelant (C)

CEFE, University of Montpellier, CNRS, EPHE, IRD, University of Paul Valéry Montpellier 3, Montpellier, France.

Szymon M Drobniak (SM)

Institute of Environmental Sciences, Jagiellonian University, Krakow, Poland.
Evolution & Ecology Research Centre and School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, Australia.

Anna Dubiec (A)

Museum and Institute of Zoology, Polish Academy of Sciences, Warsaw, Poland.

Marcel Eens (M)

Department of Biology, University of Antwerp, Antwerp, Belgium.

Kjell Einar Erikstad (K)

Norwegian Institute for Nature Research, FRAM - High North Research Centre for Climate and the Environment, Tromsø, Norway.

Silvia Espín (S)

Area of Toxicology, Department of Health Sciences, University of Murcia, Murcia, Spain.

Damien R Farine (DR)

Centre for the Advanced Study of Collective Behaviour, University of Konstanz, Konstanz, Germany.
Department of Collective Behavior, Max Planck Institute of Animal Behavior, Konstanz, Germany.
Department of Biology, University of Konstanz, Konstanz, Germany.

Jordi Figuerola (J)

Department of Wetland Ecology, Estación Biológica de Doñana (CSIC), Sevilla, Spain.

Pınar Kavak Gülbeyaz (P)

Biodiversity and Conservation Lab, Department of Biology, METU, Ankara, Turkey.
Environmental Engineering Department, Hacettepe University, Ankara, Turkey.

Arnaud Grégoire (A)

CEFE, University of Montpellier, CNRS, EPHE, IRD, University of Paul Valéry Montpellier 3, Montpellier, France.

Ian R Hartley (IR)

Lancaster Environment Centre, Lancaster University, Lancaster, UK.

Michaela Hau (M)

Evolutionary Physiology Group, Max Planck Institute for Ornithology, Seewiesen, Germany.
Department of Biology, University of Konstanz, Konstanz, Germany.

Gergely Hegyi (G)

Behavioural Ecology Group, Department of Systematic Zoology and Ecology, ELTE Eötvös Loránd University, Budapest, Hungary.

Sabine Hille (S)

Department of integrative Biology and Biodiversity Research, University of Natural Resources and Life Sciences Vienna, Vienna, Austria.

Camilla A Hinde (CA)

Behavioural Ecology Group, Biological Sciences, Anglia Ruskin University, Cambridge, UK.

Benedikt Holtmann (B)

Behavioural Ecology, Department of Biology, Ludwig-Maximilians University of Munich, Planegg-Martinsried, Germany.

Tatyana Ilyina (T)

Department of Vertebrate Zoology, Faculty of Biology, Lomonosov Moscow State Univ, Moscow, Russia.

Caroline Isaksson (C)

Department of Biology, Lund University, Lund, Sweden.

Arne Iserbyt (A)

Department of Biology, University of Antwerp, Antwerp, Belgium.

Elena Ivankina (E)

Zvenigorod Biological Station, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia.

Wojciech Kania (W)

Ornithological Station, Museum and Institute of Zoology, Polish Academy of Sciences, Gdańsk, Poland.

Bart Kempenaers (B)

Department Behavioural Ecology & Evolutionary Genetics, Max Planck Institute for Ornithology, Seewiesen, Germany.

Anvar Kerimov (A)

Department of Vertebrate Zoology, Faculty of Biology, Lomonosov Moscow State Univ, Moscow, Russia.

Jan Komdeur (J)

Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen.

Peter Korsten (P)

Department of Animal Behaviour, Bielefeld University, Bielefeld, Germany.

Miroslav Král (M)

Department of Zoology, Faculty of Science, Palacký University, Olomouc, Czech Republic.

Miloš Krist (M)

Department of Zoology, Faculty of Science, Palacký University, Olomouc, Czech Republic.

Marcel Lambrechts (M)

CEFE, University of Montpellier, CNRS, EPHE, IRD, University of Paul Valéry Montpellier 3, Montpellier, France.

Carlos E Lara (CE)

Department of Zoology, University of Otago, Dunedin, New Zealand.

Agu Leivits (A)

Department of Nature Conservation, Environmental Board, Estonia.

András Liker (A)

MTA-PE Evolutionary Ecology Research Group, University of Pannonia, Veszprém, Hungary.

Jaanis Lodjak (J)

Department of Zoology, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia.

Marko Mägi (M)

Department of Zoology, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia.

Mark C Mainwaring (MC)

Division of Biological Sciences, University of Montana, Missoula, USA.

Raivo Mänd (R)

Department of Zoology, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia.

Bruno Massa (B)

Stazione Ornitologica, Monreale, Italy.

Sylvie Massemin (S)

Université de Strasbourg, CNRS, IPHC UMR 7178, Strasbourg, France.

Jesús Martínez-Padilla (J)

Department of Biodiversity Conservation and Ecosystem Restoration, Pyrenean Institute of Ecology (CSIC), Jaca, Spain.

Tomasz D Mazgajski (TD)

Museum and Institute of Zoology, Polish Academy of Sciences, Warsaw, Poland.

Adèle Mennerat (A)

Department of Biological Sciences, University of Bergen, Bergen, Norway.

Juan Moreno (J)

Department de Ecología Evolutiva, Museo Nacional de Ciencias Naturales (CSIC), Madrid, Spain.

Alexia Mouchet (A)

Behavioural Ecology, Department of Biology, Ludwig-Maximilians University of Munich, Planegg-Martinsried, Germany.

Shinichi Nakagawa (S)

Evolution & Ecology Research Centre and School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, Australia.

Jan-Åke Nilsson (JÅ)

Department of Biology, Lund University, Lund, Sweden.

Johan F Nilsson (JF)

Department of Biology, Lund University, Lund, Sweden.

Ana Cláudia Norte (A)

Department of Life Sciences, MARE - Marine and Environmental Sciences Centre, University of Coimbra, Coimbra, Portugal.

Kees van Oers (K)

Department of Animal Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.
Behavioural Ecology Group, Department of Animal Sciences, Wageningen University & Research, Wageningen, The Netherlands.

Markku Orell (M)

Ecology and Genetics Research Unit, University of Oulu, Oulu, Finland.

Jaime Potti (J)

Department of Ethology and Biodiversity Conservation, Estación Biológica de Doñana-CSIC, Seville, Spain.

John L Quinn (JL)

School of Biological, Earth and Environmental Sciences, University College Cork, Cork, Ireland.

Denis Réale (D)

Département des Sciences Biologiques, Université du Québec A Montréal, Montréal, Canada.

Tone Kristin Reiertsen (T)

Norwegian Institute for Nature Research, FRAM - High North Research Centre for Climate and the Environment, Tromsø, Norway.

Balázs Rosivall (B)

Behavioural Ecology Group, Department of Systematic Zoology and Ecology, ELTE Eötvös Loránd University, Budapest, Hungary.

Andrew F Russell (AF)

Centre for Ecology and Conservation, University of Exeter, Penryn, Cornwall, UK.

Seppo Rytkönen (S)

Ecology and Genetics Research Unit, University of Oulu, Oulu, Finland.

Pablo Sánchez-Virosta (P)

Area of Toxicology, Department of Health Sciences, University of Murcia, Murcia, Spain.

Eduardo S A Santos (ESA)

BECO do Departamento de Zoologia, Universidade de São Paulo, São Paulo, Brazil.

Julia Schroeder (J)

Department of Life Sciences, Imperial College London, Ascot, UK.

Juan Carlos Senar (JC)

Evolutionary and Behavioural Ecology Research Unit, Museu de Ciències Naturals de Barcelona, Barcelona, Spain.

Gábor Seress (G)

MTA-PE Evolutionary Ecology Research Group, University of Pannonia, Veszprém, Hungary.

Tore Slagsvold (T)

Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.

Marta Szulkin (M)

Centre of New Technologies, University of Warsaw, Warsaw, Poland.

Céline Teplitsky (C)

CEFE, University of Montpellier, CNRS, EPHE, IRD, University of Paul Valéry Montpellier 3, Montpellier, France.

Vallo Tilgar (V)

Department of Zoology, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia.

Andrey Tolstoguzov (A)

Institute of Biology of the Karelian Research Centre of the Russian Academy of Sciences, Petrozavodsk, Russia.

János Török (J)

Behavioural Ecology Group, Department of Systematic Zoology and Ecology, ELTE Eötvös Loránd University, Budapest, Hungary.

Mihai Valcu (M)

Department Behavioural Ecology & Evolutionary Genetics, Max Planck Institute for Ornithology, Seewiesen, Germany.

Emma Vatka (E)

Ecological Genetics Research Unit, Organismal and Evolutionary Biology Research Programme, Faculty of Biological & Environmental Sciences, University of Helsinki, Helsinki, Finland.

Simon Verhulst (S)

Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen.

Hannah Watson (H)

Department of Biology, Lund University, Lund, Sweden.

Teru Yuta (T)

Yamashina Institute for Ornithology, Abiko, Japan.
Graduate School of Environment Science, Hokkaido University, Sapporo, Japan.

José M Zamora-Marín (JM)

Department of Zoology and Physical Anthropology, University of Murcia, Murcia, Spain.

Marcel E Visser (ME)

Department of Animal Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.

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