A multi-country field validation of the FluChip-8G Insight Assay.


Journal

Journal of virological methods
ISSN: 1879-0984
Titre abrégé: J Virol Methods
Pays: Netherlands
ID NLM: 8005839

Informations de publication

Date de publication:
03 2021
Historique:
received: 08 10 2020
revised: 20 11 2020
accepted: 23 11 2020
pubmed: 4 12 2020
medline: 25 11 2021
entrez: 3 12 2020
Statut: ppublish

Résumé

It is critical to rapidly detect novel and non-seasonal influenza strains. Currently available assays have limited sensitivity in detecting novel influenza subtypes. We performed a multi-country field validation of the FluChip-8G Insight, an assay able to detect and characterize influenza A/B viruses and non-seasonal influenza viruses. We evaluated the performance of the FluChip-8G Insight on nasal and throat swab clinical samples from Thailand, Philippines and Nepal. Influenza PCR positive and negative samples tested using the US CDC Human Influenza Dx Panel reference standard were selected for testing using the FluChip-8G Influenza Insight. A total of 909 specimens were included in the analysis. The overall sensitivity and specificity of the FluChip-8G Insight to detect combined influenza A+B was 86 % and 100%, respectively. PPV and NPV were estimated at 100 % (95 % CI 99-100) and 73 % (95 % CI 68-78), respectively. Sensitivity across all influenza subtypes was 100% for specimens with <20 and 20-25 Ct values, respectively, but as Ct values increased, sensitivity across all influenza subtypes decreased significantly (p < 0.001) for specimens with Ct values ≥32. The FluChip-8G Insight showed good precision and reproducibility among all 3 sites with robust identification of both influenza A and B targets with Ct values <32 and in the absence of co-infection. Positioning this platform in countries considered as hotspots for the emergence of novel/zoonotic influenza strains can increase the lead time in detecting and containing novel influenza strains with pandemic potential.

Identifiants

pubmed: 33271255
pii: S0166-0934(20)30281-0
doi: 10.1016/j.jviromet.2020.114029
pii:
doi:

Types de publication

Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

114029

Informations de copyright

Published by Elsevier B.V.

Auteurs

John Mark Velasco (JM)

U.S. Army Medical Directorate - Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand; University of the Philippines Manila, Ermita, Manila, Philippines. Electronic address: JSVelasco@up.edu.ph.

Sanjaya Shrestha (S)

Walter Reed/AFRIMS Research Unit Nepal (WARUN), Kathmandu, Nepal.

Maria Theresa Valderama (MT)

U.S. Army Medical Directorate - Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.

Jasmin Shrestha (J)

Walter Reed/AFRIMS Research Unit Nepal (WARUN), Kathmandu, Nepal.

Binob Shrestha (B)

Walter Reed/AFRIMS Research Unit Nepal (WARUN), Kathmandu, Nepal.

Paula Corazon Diones (PC)

U.S. Army Medical Directorate - Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.

Susie Leonardia (S)

U.S. Army Medical Directorate - Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.

Yongyuth Poolpanichupatam (Y)

U.S. Army Medical Directorate - Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.

Kittinun Hussem (K)

U.S. Army Medical Directorate - Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.

Domingo Chua (D)

V Luna Medical Center, Armed Forces of the Philippines Health Service Command, Quezon City, Philippines.

Fatima Claire Navarro (FC)

V Luna Medical Center, Armed Forces of the Philippines Health Service Command, Quezon City, Philippines.

Maribel Develos (M)

V Luna Medical Center, Armed Forces of the Philippines Health Service Command, Quezon City, Philippines.

Louis Macareo (L)

U.S. Army Medical Directorate - Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.

Damon Ellison (D)

U.S. Army Medical Directorate - Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.

Stefan Fernandez (S)

U.S. Army Medical Directorate - Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.

Chonticha Klungthong (C)

U.S. Army Medical Directorate - Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand. Electronic address: ChontichaK.fsn@afrims.org.

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