A Role for the Mre11-Rad50-Xrs2 Complex in Gene Expression and Chromosome Organization.


Journal

Molecular cell
ISSN: 1097-4164
Titre abrégé: Mol Cell
Pays: United States
ID NLM: 9802571

Informations de publication

Date de publication:
07 01 2021
Historique:
received: 28 04 2020
revised: 03 11 2020
accepted: 05 11 2020
pubmed: 6 12 2020
medline: 28 1 2021
entrez: 5 12 2020
Statut: ppublish

Résumé

Mre11-Rad50-Xrs2 (MRX) is a highly conserved complex with key roles in various aspects of DNA repair. Here, we report a new function for MRX in limiting transcription in budding yeast. We show that MRX interacts physically and colocalizes on chromatin with the transcriptional co-regulator Mediator. MRX restricts transcription of coding and noncoding DNA by a mechanism that does not require the nuclease activity of Mre11. MRX is required to tether transcriptionally active loci to the nuclear pore complex (NPC), and it also promotes large-scale gene-NPC interactions. Moreover, MRX-mediated chromatin anchoring to the NPC contributes to chromosome folding and helps to control gene expression. Together, these findings indicate that MRX has a role in transcription and chromosome organization that is distinct from its known function in DNA repair.

Identifiants

pubmed: 33278361
pii: S1097-2765(20)30788-7
doi: 10.1016/j.molcel.2020.11.010
pmc: PMC8112817
mid: NIHMS1700051
pii:
doi:

Substances chimiques

DNA-Binding Proteins 0
Multiprotein Complexes 0
RAD50 protein, S cerevisiae 0
Saccharomyces cerevisiae Proteins 0
XRS2 protein, S cerevisiae 0
Endodeoxyribonucleases EC 3.1.-
Exodeoxyribonucleases EC 3.1.-
MRE11 protein, S cerevisiae EC 3.1.-

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

183-197.e6

Subventions

Organisme : NIGMS NIH HHS
ID : R01 GM112131
Pays : United States

Informations de copyright

Copyright © 2020 Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of Interests The authors declare no competing interests.

Références

Nat Rev Mol Cell Biol. 2018 Apr;19(4):262-274
pubmed: 29209056
Mol Cell. 2012 Oct 12;48(1):98-108
pubmed: 22885006
Nat Rev Mol Cell Biol. 2002 May;3(5):317-27
pubmed: 11988766
Cell. 2015 Aug 27;162(5):1016-28
pubmed: 26317468
Nature. 2011 Jun 22;475(7354):114-7
pubmed: 21697827
Mol Cell. 2020 May 7;78(3):396-410.e4
pubmed: 32169162
BMC Cell Biol. 2006 Apr 24;7:19
pubmed: 16635267
Nat Rev Mol Cell Biol. 2016 Jul;17(7):399-412
pubmed: 27075410
Genes Dev. 2005 May 15;19(10):1188-98
pubmed: 15905407
BMC Genomics. 2015 Apr 15;16:300
pubmed: 25881024
Cell. 2007 Feb 23;128(4):707-19
pubmed: 17320508
Genes Dev. 2013 Dec 1;27(23):2549-62
pubmed: 24298055
Mol Cell. 2016 Feb 4;61(3):379-392
pubmed: 26805575
Mol Cell. 2013 Nov 21;52(4):473-84
pubmed: 24267449
Cell. 2002 May 31;109(5):551-62
pubmed: 12062099
Cell. 2009 Jun 26;137(7):1194-211
pubmed: 19563753
Nucleic Acids Res. 2016 Jul 8;44(W1):W160-5
pubmed: 27079975
Nat Commun. 2018 Jan 15;9(1):189
pubmed: 29335486
Mol Cell. 2006 Feb 3;21(3):379-91
pubmed: 16455493
FEBS Lett. 2008 Jun 18;582(14):2017-22
pubmed: 18435921
Genes Dev. 2018 May 1;32(9-10):695-710
pubmed: 29785963
Nucleic Acids Res. 2017 Feb 28;45(4):1714-1730
pubmed: 27899590
Nature. 2009 Feb 19;457(7232):1033-7
pubmed: 19169243
Wiley Interdiscip Rev Syst Biol Med. 2011 Mar-Apr;3(2):147-66
pubmed: 21305702
Proc Natl Acad Sci U S A. 2013 Nov 12;110(46):18602-7
pubmed: 24173036
Mol Cell Biol. 2006 Nov;26(21):7858-70
pubmed: 16954382
Elife. 2015 Mar 30;4:e06073
pubmed: 25821983
Nature. 2006 Jun 8;441(7094):774-8
pubmed: 16760983
Nat Methods. 2016 Dec;13(12):1009-1011
pubmed: 27723753
Nucleic Acids Res. 2018 Jul 2;46(W1):W11-W16
pubmed: 29901812
Genes Dev. 2016 Sep 15;30(18):2119-2132
pubmed: 27688401
Cell Cycle. 2009 Aug 15;8(16):2557-64
pubmed: 19597342
Genes (Basel). 2018 Nov 29;9(12):
pubmed: 30501098
J Cell Biol. 2016 Mar 14;212(6):633-46
pubmed: 26953353
Nature. 2009 Feb 19;457(7232):1038-42
pubmed: 19169244
Nat Struct Mol Biol. 2011 Sep 04;18(10):1124-31
pubmed: 21892167
Nat Commun. 2019 May 24;10(1):2313
pubmed: 31127121
Cell. 2016 Oct 20;167(3):709-721.e12
pubmed: 27768892
Mol Biol Cell. 2012 Apr;23(7):1367-75
pubmed: 22323286
J Cell Biol. 2013 Jun 10;201(6):809-26
pubmed: 23733345
Trends Genet. 2016 Jun;32(6):322-333
pubmed: 27066865
Nat Cell Biol. 2017 Dec;19(12):1400-1411
pubmed: 29180822
Genetics. 2001 Dec;159(4):1423-33
pubmed: 11779786
Mol Biol Cell. 2015 Apr 1;26(7):1395-410
pubmed: 25631822
J Cell Biol. 2013 Mar 4;200(5):589-604
pubmed: 23460676
Curr Biol. 2004 Oct 5;14(19):1703-11
pubmed: 15458641
Mol Cell. 2017 Apr 6;66(1):63-76.e6
pubmed: 28366641
Mol Cell. 2011 Nov 4;44(3):397-409
pubmed: 22055186
Cell. 2004 May 14;117(4):427-39
pubmed: 15137937
Cold Spring Harb Symp Quant Biol. 2017;82:45-55
pubmed: 29728444
Mol Cell. 2020 Jan 16;77(2):395-410.e3
pubmed: 31759824
EMBO J. 2012 Apr 4;31(7):1811-22
pubmed: 22333915
Cell. 2013 Jun 6;153(6):1281-95
pubmed: 23706625
Biochimie. 2011 Nov;93(11):1889-96
pubmed: 21771634
Nat Cell Biol. 2019 Oct;21(10):1286-1299
pubmed: 31570834
Mol Cell. 2016 Dec 1;64(5):951-966
pubmed: 27889450
Nucleic Acids Res. 2017 Sep 6;45(15):8806-8821
pubmed: 28575439
J Cell Biol. 2016 Feb 1;212(3):321-34
pubmed: 26811423
Trends Genet. 2013 Nov;29(11):621-9
pubmed: 23870137
Genome Biol. 2008;9(9):R137
pubmed: 18798982
PLoS One. 2011;6(7):e21923
pubmed: 21818277
Nucleic Acids Res. 2014 Jun;42(10):6686-97
pubmed: 24705649
Nat Cell Biol. 2010 Feb;12(2):111-8
pubmed: 20098417
Mol Cell Biol. 2007 Mar;27(5):1602-13
pubmed: 17178837
J Biol Chem. 2007 Feb 2;282(5):3042-9
pubmed: 17158105
Sci Adv. 2019 Apr 10;5(4):eaaw1668
pubmed: 30989119
Genes Genet Syst. 2007 Feb;82(1):21-33
pubmed: 17396017
Curr Biol. 2004 Dec 14;14(23):R994-6
pubmed: 15589147
EMBO J. 2009 Apr 22;28(8):1142-56
pubmed: 19279665
Mol Cell. 2020 Jan 2;77(1):67-81.e7
pubmed: 31784359
Cell. 2015 Jan 29;160(3):367-80
pubmed: 25619691
Cell. 2014 Jun 19;157(7):1712-23
pubmed: 24949978
Cell. 2015 Jul 2;162(1):108-19
pubmed: 26119342
Nature. 2011 Jan 20;469(7330):368-73
pubmed: 21248844
Commun Biol. 2018 Oct 31;1:181
pubmed: 30393778
Nucleic Acids Res. 2015 Oct 30;43(19):9214-31
pubmed: 26240385
Curr Opin Cell Biol. 2007 Jun;19(3):305-10
pubmed: 17467257
Nat Rev Mol Cell Biol. 2011 Feb;12(2):90-103
pubmed: 21252998
PLoS Genet. 2013;9(2):e1003308
pubmed: 23468646
Mol Cell. 2013 Sep 26;51(6):807-18
pubmed: 24074957
Curr Opin Cell Biol. 2017 Jun;46:26-32
pubmed: 28088069
Transcription. 2017;8(5):328-342
pubmed: 28841352
Bioinformatics. 2010 Mar 15;26(6):841-2
pubmed: 20110278
Cell. 2010 Feb 5;140(3):372-83
pubmed: 20144761
Nature. 2008 Oct 9;455(7214):770-4
pubmed: 18806779
Genes Dev. 2003 Aug 15;17(16):1957-62
pubmed: 12923051
J Cell Biol. 2001 Jan 22;152(2):385-400
pubmed: 11266454
Nature. 2006 Jun 8;441(7094):770-3
pubmed: 16760982
Cell Rep. 2020 May 5;31(5):107612
pubmed: 32375040
Nat Rev Genet. 2007 Jul;8(7):507-17
pubmed: 17549064
Mol Cell. 2014 Aug 21;55(4):626-39
pubmed: 25066231

Auteurs

Romain Forey (R)

Institut de Génétique Humaine, CNRS, Université de Montpellier, Equipe Labéllisée Ligue contre le Cancer, 34396 Montpellier, France.

Antoine Barthe (A)

Institut de Génétique Humaine, CNRS, Université de Montpellier, Equipe Labéllisée Ligue contre le Cancer, 34396 Montpellier, France.

Mireille Tittel-Elmer (M)

Departments of Biochemistry and Molecular Biology and Oncology, Robson DNA Science Centre, Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, Alberta, T2N 1N4, Canada.

Maxime Wery (M)

Institut Curie, PSL Research University, CNRS UMR 3244, ncRNA, Epigenetic and Genome Fluidity, Université Pierre et Marie Curie, 26 rue d'Ulm, 75248 Paris, France.

Marie-Bénédicte Barrault (MB)

Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198 Gif-sur-Yvette, France.

Cécile Ducrot (C)

Institute of Molecular and Cellular Radiobiology, Commissariat à l'Énergie Atomique et aux Énergies Alternatives (CEA)/Direction de la Recherche Fondamentale (DRF), 92260 Fontenay-aux-Roses Cedex, France.

Andrew Seeber (A)

Center for Advanced Imaging, Harvard University, Cambridge, MA 02138, USA; University of Basel and Friedrich Miescher Institute for Biomedical Research, Faculty of Natural Sciences, Klingelbergstrasse 50, 4056 Basel, Switzerland.

Nils Krietenstein (N)

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.

Ugo Szachnowski (U)

Institut Curie, PSL Research University, CNRS UMR 3244, ncRNA, Epigenetic and Genome Fluidity, Université Pierre et Marie Curie, 26 rue d'Ulm, 75248 Paris, France.

Magdalena Skrzypczak (M)

Laboratory of Bioinformatics and Systems Biology, Centre of New Technologies, University of Warsaw, Zwirki i Wigury 93, 02-089 Warsaw, Poland.

Krzysztof Ginalski (K)

Laboratory of Bioinformatics and Systems Biology, Centre of New Technologies, University of Warsaw, Zwirki i Wigury 93, 02-089 Warsaw, Poland.

Maga Rowicka (M)

Department of Biochemistry and Molecular Biology, University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA.

Jennifer A Cobb (JA)

Departments of Biochemistry and Molecular Biology and Oncology, Robson DNA Science Centre, Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, Alberta, T2N 1N4, Canada.

Oliver J Rando (OJ)

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.

Julie Soutourina (J)

Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198 Gif-sur-Yvette, France.

Michel Werner (M)

Institut Jacques Monod, CNRS UMR 7592, Université Paris Diderot, Sorbonne Paris Cité, 75013 Paris, France.

Karine Dubrana (K)

Institute of Molecular and Cellular Radiobiology, Commissariat à l'Énergie Atomique et aux Énergies Alternatives (CEA)/Direction de la Recherche Fondamentale (DRF), 92260 Fontenay-aux-Roses Cedex, France.

Susan M Gasser (SM)

University of Basel and Friedrich Miescher Institute for Biomedical Research, Faculty of Natural Sciences, Klingelbergstrasse 50, 4056 Basel, Switzerland.

Antonin Morillon (A)

Institut Curie, PSL Research University, CNRS UMR 3244, ncRNA, Epigenetic and Genome Fluidity, Université Pierre et Marie Curie, 26 rue d'Ulm, 75248 Paris, France.

Philippe Pasero (P)

Institut de Génétique Humaine, CNRS, Université de Montpellier, Equipe Labéllisée Ligue contre le Cancer, 34396 Montpellier, France.

Armelle Lengronne (A)

Institut de Génétique Humaine, CNRS, Université de Montpellier, Equipe Labéllisée Ligue contre le Cancer, 34396 Montpellier, France. Electronic address: armelle.lengronne@igh.cnrs.fr.

Jérôme Poli (J)

Institut de Génétique Humaine, CNRS, Université de Montpellier, Equipe Labéllisée Ligue contre le Cancer, 34396 Montpellier, France; University of Basel and Friedrich Miescher Institute for Biomedical Research, Faculty of Natural Sciences, Klingelbergstrasse 50, 4056 Basel, Switzerland. Electronic address: jerome.poli@igh.cnrs.fr.

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