Whole-genome-based phylogeny of African swine fever virus.
African swine fever virus
baculovirus
phylogenetic tree
Journal
Veterinary world
ISSN: 0972-8988
Titre abrégé: Vet World
Pays: India
ID NLM: 101504872
Informations de publication
Date de publication:
Oct 2020
Oct 2020
Historique:
received:
14
05
2020
accepted:
21
08
2020
entrez:
7
12
2020
pubmed:
8
12
2020
medline:
8
12
2020
Statut:
ppublish
Résumé
A genome-scale phylogenetic analysis was used to infer the evolutionary dynamics of All complete ASFV genomes from NCBI's resource as of March 2020 were used. The phylogenetic analysis used maximum likelihood and neighbor-joining methods. The evolutionary models detection was done with the help of the package of programs MEGA-X. Algorithms were used to build phylogenetic trees for type B DNA polymerases of ASFV (n=34) and HcDNAV (n=2), as an external group. An expedient categorization of the Asfarviridae family uses five clades. Genotype 1 (except for LIV 5/40 virus isolate) as well genotype 7 are assigned to the alpha clade; genotype 2 to the beta clade; genotypes 8, 9, and 10 to the gamma clade; genotype 5 to the delta clade; and genotypes 3, 4, and 20, as well as genotype 22 and the LIV 5/40 isolate to the epsilon clade. Branch lengths on the phylogenetic tree are proportional to genetic distance along the branch. Branches at the phylogenetic tree of Asfarviridae are much shorter than branches for Baculoviridae. Shorter branches in ASFVs population suggest that Asfarviridae evolved relatively recently and remain more closely related. We suggest applying more robust standards using whole genomes to ensure the correct classification of ASFV and maintain phylogeny as a useful tool.
Identifiants
pubmed: 33281345
doi: 10.14202/vetworld.2020.2118-2125
pii: Vetworld-13-2118
pmc: PMC7704302
doi:
Types de publication
Journal Article
Langues
eng
Pagination
2118-2125Informations de copyright
Copyright: © Aslanyan, et al.
Références
J Gen Virol. 2008 Feb;89(Pt 2):397-408
pubmed: 18198370
Microbiol Resour Announc. 2018 Oct 4;7(13):
pubmed: 30533685
Transbound Emerg Dis. 2020 Jul;67(4):1553-1562
pubmed: 31965706
Arch Virol. 1996;141(9):1795-802
pubmed: 8893801
Virol J. 2009 Oct 27;6:178
pubmed: 19860921
Virus Genes. 2015 Apr;50(2):303-9
pubmed: 25645905
Transbound Emerg Dis. 2018 Apr;65(2):420-431
pubmed: 28921895
Mol Biol Evol. 2005 Nov;22(11):2257-64
pubmed: 16049194
Transbound Emerg Dis. 2019 Nov;66(6):2566-2591
pubmed: 31332955
Genome Announc. 2016 Nov 17;4(6):
pubmed: 27856577
Virology. 2010 Apr 25;400(1):128-36
pubmed: 20171711
Microbiol Resour Announc. 2019 Oct 17;8(42):
pubmed: 31624164
Viruses. 2018 Jul 11;10(7):
pubmed: 29997344
Transbound Emerg Dis. 2017 Feb;64(1):300-304
pubmed: 25808027
Mol Biol Evol. 2018 Jun 1;35(6):1547-1549
pubmed: 29722887
Viruses. 2019 Dec 06;11(12):
pubmed: 31817647
Philos Trans R Soc Lond B Biol Sci. 2009 Sep 27;364(1530):2683-96
pubmed: 19687038
Arch Virol. 2003 Apr;148(4):693-706
pubmed: 12664294
Emerg Microbes Infect. 2019;8(1):303-306
pubmed: 30866784
Virology. 1995 Apr 1;208(1):249-78
pubmed: 11831707
Mol Biol Evol. 1987 Jul;4(4):406-25
pubmed: 3447015
Virology. 1990 Apr;175(2):477-84
pubmed: 2327074
J Gen Virol. 2015 Feb;96(Pt 2):408-419
pubmed: 25406173
Microbiol Resour Announc. 2020 Mar 5;9(10):
pubmed: 32139555
Virol J. 2018 Dec 14;15(1):190
pubmed: 30547827
Emerg Infect Dis. 2011 Apr;17(4):599-605
pubmed: 21470447
BMC Evol Biol. 2007 Mar 15;7:41
pubmed: 17359548
Arch Virol. 2005 Dec;150(12):2439-52
pubmed: 16052280
Genet Mol Res. 2015 May 04;14(2):4566-74
pubmed: 25966230
Vaccine. 2011 Jun 20;29(28):4593-600
pubmed: 21549789
Emerg Infect Dis. 2015 Feb;21(2):312-5
pubmed: 25625574
Evolution. 1985 Jul;39(4):783-791
pubmed: 28561359
Viruses. 2019 Sep 11;11(9):
pubmed: 31514438