Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
18 12 2020
Historique:
received: 21 01 2020
accepted: 17 09 2020
entrez: 19 12 2020
pubmed: 20 12 2020
medline: 16 1 2021
Statut: epublish

Résumé

Pharmaceutical drugs targeting dyslipidemia and cardiovascular disease (CVD) may increase the risk of fatty liver disease and other metabolic disorders. To identify potential novel CVD drug targets without these adverse effects, we perform genome-wide analyses of participants in the HUNT Study in Norway (n = 69,479) to search for protein-altering variants with beneficial impact on quantitative blood traits related to cardiovascular disease, but without detrimental impact on liver function. We identify 76 (11 previously unreported) presumed causal protein-altering variants associated with one or more CVD- or liver-related blood traits. Nine of the variants are predicted to result in loss-of-function of the protein. This includes ZNF529:p.K405X, which is associated with decreased low-density-lipoprotein (LDL) cholesterol (P = 1.3 × 10

Identifiants

pubmed: 33339817
doi: 10.1038/s41467-020-20086-3
pii: 10.1038/s41467-020-20086-3
pmc: PMC7749177
doi:

Substances chimiques

LDLR protein, human 0
Lipids 0
Receptors, LDL 0

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, N.I.H., Intramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

6417

Subventions

Organisme : NIA NIH HHS
ID : N01AG12109
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL109946
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL139731
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL120393
Pays : United States
Organisme : NHLBI NIH HHS
ID : R35 HL135824
Pays : United States
Organisme : NIDA NIH HHS
ID : HHSN271201100005C
Pays : United States
Organisme : NIDDK NIH HHS
ID : R01 DK062370
Pays : United States
Organisme : NIDDK NIH HHS
ID : U01 DK062370
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL130705
Pays : United States
Organisme : NHLBI NIH HHS
ID : K08 HL140203
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL117626
Pays : United States
Organisme : NHGRI NIH HHS
ID : T32 HG000040
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL123333
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL138139
Pays : United States
Organisme : NHLBI NIH HHS
ID : K99 HL150233
Pays : United States
Organisme : NIAID NIH HHS
ID : R01 AI132476
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL137214
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL068878
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL127564
Pays : United States

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Auteurs

Jonas B Nielsen (JB)

Department of Internal Medicine: Cardiology, University of Michigan, Ann Arbor, MI, USA. jonas.bille.nielsen@gmail.com.
K.G. Jebsen Center for Genetic Epidemiology, Department of Public Health and Nursing, Faculty of Medicine and Health Sciences, Norwegian University of Science and Technology, NTNU, Trondheim, Norway. jonas.bille.nielsen@gmail.com.

Oren Rom (O)

Department of Internal Medicine: Cardiology, University of Michigan, Ann Arbor, MI, USA.

Ida Surakka (I)

Department of Internal Medicine: Cardiology, University of Michigan, Ann Arbor, MI, USA.

Sarah E Graham (SE)

Department of Internal Medicine: Cardiology, University of Michigan, Ann Arbor, MI, USA.

Wei Zhou (W)

Program in Medical and Population Genetics, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Analytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, MA, USA.
Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.

Tanmoy Roychowdhury (T)

Department of Internal Medicine: Cardiology, University of Michigan, Ann Arbor, MI, USA.

Lars G Fritsche (LG)

Department of Internal Medicine: Cardiology, University of Michigan, Ann Arbor, MI, USA.
K.G. Jebsen Center for Genetic Epidemiology, Department of Public Health and Nursing, Faculty of Medicine and Health Sciences, Norwegian University of Science and Technology, NTNU, Trondheim, Norway.
Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA.

Sarah A Gagliano Taliun (SA)

Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA.
Center for Statistical Genetics, University of Michigan School of Public Health, Ann Arbor, MI, USA.

Carlo Sidore (C)

Istituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche (CNR), Monserrato, Cagliari, Italy.

Yuhao Liu (Y)

Department of Internal Medicine: Cardiology, University of Michigan, Ann Arbor, MI, USA.

Maiken E Gabrielsen (ME)

K.G. Jebsen Center for Genetic Epidemiology, Department of Public Health and Nursing, Faculty of Medicine and Health Sciences, Norwegian University of Science and Technology, NTNU, Trondheim, Norway.

Anne Heidi Skogholt (AH)

K.G. Jebsen Center for Genetic Epidemiology, Department of Public Health and Nursing, Faculty of Medicine and Health Sciences, Norwegian University of Science and Technology, NTNU, Trondheim, Norway.

Brooke Wolford (B)

Department of Internal Medicine: Cardiology, University of Michigan, Ann Arbor, MI, USA.
Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA.

William Overton (W)

Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA.

Ying Zhao (Y)

Department of Internal Medicine: Cardiology, University of Michigan, Ann Arbor, MI, USA.

Jin Chen (J)

Department of Internal Medicine: Cardiology, University of Michigan, Ann Arbor, MI, USA.

He Zhang (H)

Department of Internal Medicine: Cardiology, University of Michigan, Ann Arbor, MI, USA.

Whitney E Hornsby (WE)

Department of Internal Medicine: Cardiology, University of Michigan, Ann Arbor, MI, USA.

Akua Acheampong (A)

Department of Internal Medicine: Cardiology, University of Michigan, Ann Arbor, MI, USA.

Austen Grooms (A)

Department of Internal Medicine: Cardiology, University of Michigan, Ann Arbor, MI, USA.

Amanda Schaefer (A)

Department of Human Genetics, University of Michigan, Ann Arbor, MI, USA.

Gregory J M Zajac (GJM)

Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA.
Center for Statistical Genetics, University of Michigan School of Public Health, Ann Arbor, MI, USA.

Luis Villacorta (L)

Department of Internal Medicine: Cardiology, University of Michigan, Ann Arbor, MI, USA.

Jifeng Zhang (J)

Department of Internal Medicine: Cardiology, University of Michigan, Ann Arbor, MI, USA.

Ben Brumpton (B)

K.G. Jebsen Center for Genetic Epidemiology, Department of Public Health and Nursing, Faculty of Medicine and Health Sciences, Norwegian University of Science and Technology, NTNU, Trondheim, Norway.

Mari Løset (M)

K.G. Jebsen Center for Genetic Epidemiology, Department of Public Health and Nursing, Faculty of Medicine and Health Sciences, Norwegian University of Science and Technology, NTNU, Trondheim, Norway.
Department of Dermatology, St. Olav's Hospital, Trondheim University Hospital, Trondheim, Norway.

Vivek Rai (V)

Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.

Pia R Lundegaard (PR)

Laboratory for Molecular Cardiology, Department of Cardiology, Centre for Cardiac, Vascular, Pulmonary and Infectious Diseases, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.
Department of Biomedical Sciences, Faculty of Medicine and Health Sciences, University of Copenhagen, Copenhagen, Denmark.

Morten S Olesen (MS)

Laboratory for Molecular Cardiology, Department of Cardiology, Centre for Cardiac, Vascular, Pulmonary and Infectious Diseases, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.
Department of Biomedical Sciences, Faculty of Medicine and Health Sciences, University of Copenhagen, Copenhagen, Denmark.

Kent D Taylor (KD)

The Institute for Translational Genomics and Population Sciences, Department of Pediatrics and Los Angeles Biomedical Research Institute, Harbor-UCLA, Torrance, CA, USA.

Nicholette D Palmer (ND)

Department of Biochemistry, Wake Forest School of Medicine, Winston-Salem, NC, USA.

Yii-Der Chen (YD)

The Institute for Translational Genomics and Population Sciences, Department of Pediatrics and Los Angeles Biomedical Research Institute, Harbor-UCLA, Torrance, CA, USA.

Seung H Choi (SH)

Program in Medical and Population Genetics, Broad Institute of Harvard and MIT, Cambridge, MA, USA.

Steven A Lubitz (SA)

Program in Medical and Population Genetics, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Cardiovascular Research Center, Massachusetts General Hospital, Boston, MA, USA.

Patrick T Ellinor (PT)

Program in Medical and Population Genetics, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Cardiovascular Research Center, Massachusetts General Hospital, Boston, MA, USA.

Kathleen C Barnes (KC)

Colorado Center for Personalized Medicine, School of Medicine, University of Colorado, Aurora, CO, USA.

Michelle Daya (M)

Colorado Center for Personalized Medicine, School of Medicine, University of Colorado, Aurora, CO, USA.

Nicholas Rafaels (N)

Colorado Center for Personalized Medicine, School of Medicine, University of Colorado, Aurora, CO, USA.

Scott T Weiss (ST)

Channing Division of Network Medicine, Department of Medicine Brigham and Women's Hospital, Boston, MA, USA.
Harvard Medical School, Boston, MA, USA.

Jessica Lasky-Su (J)

Channing Division of Network Medicine, Department of Medicine Brigham and Women's Hospital, Boston, MA, USA.
Harvard Medical School, Boston, MA, USA.

Russell P Tracy (RP)

Department of Pathology and Laboratory Medicine, Larner College of Medicine, University of Vermont, Burlington, VT, USA.
Department of Biochemistry, Larner College of Medicine, University of Vermont, Burlington, VT, USA.

Ramachandran S Vasan (RS)

Department of Medicine, Boston University School of Medicine, Boston, MA, 02118, USA.
Framingham Heart Study, Framingham, MA, USA.

L Adrienne Cupples (LA)

Framingham Heart Study, Framingham, MA, USA.
Department of Biostatistics, Boston University School of Public Health, Boston, MA, USA.

Rasika A Mathias (RA)

GeneSTAR Research Program, Department of Medicine, Johns Hopkins School of Medicine, Baltimore, MD, USA.

Lisa R Yanek (LR)

GeneSTAR Research Program, Department of Medicine, Johns Hopkins School of Medicine, Baltimore, MD, USA.

Lewis C Becker (LC)

GeneSTAR Research Program, Department of Medicine, Johns Hopkins School of Medicine, Baltimore, MD, USA.

Patricia A Peyser (PA)

Department of Epidemiology, School of Public Health, University of Michigan, Ann Arbor, MI, USA.

Lawrence F Bielak (LF)

Department of Epidemiology, School of Public Health, University of Michigan, Ann Arbor, MI, USA.

Jennifer A Smith (JA)

Department of Epidemiology, School of Public Health, University of Michigan, Ann Arbor, MI, USA.
Survey Research Center, Institute for Social Research, University of Michigan, Ann Arbor, MI, USA.

Stella Aslibekyan (S)

The University of Alabama at Birmingham, Birmingham, AL, USA.
23andMe, Inc., Sunnyvale, CA, USA.

Bertha A Hidalgo (BA)

The University of Alabama at Birmingham, Birmingham, AL, USA.

Donna K Arnett (DK)

Deans Office, College of Public Health, University of Kentucky, Lexington, KY, USA.

Marguerite R Irvin (MR)

The University of Alabama at Birmingham, Birmingham, AL, USA.

James G Wilson (JG)

Department of Physiology and Biophysics, University of Mississippi Medical Center, Jackson, MS, USA.
Jackson Heart Study, Jackson, MS, USA.

Solomon K Musani (SK)

Jackson Heart Study, Jackson, MS, USA.
Department of Medicine, University of Mississippi Medical Center, Jackson, MS, USA.

Adolfo Correa (A)

Jackson Heart Study, Jackson, MS, USA.
Department of Medicine, University of Mississippi Medical Center, Jackson, MS, USA.

Stephen S Rich (SS)

Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA.

Xiuqing Guo (X)

The Institute for Translational Genomics and Population Sciences, Department of Pediatrics and Los Angeles Biomedical Research Institute, Harbor-UCLA, Torrance, CA, USA.

Jerome I Rotter (JI)

The Institute for Translational Genomics and Population Sciences, Department of Pediatrics and Los Angeles Biomedical Research Institute, Harbor-UCLA, Torrance, CA, USA.

Barbara A Konkle (BA)

BloodWorks Northwest, University of Washington, Seattle, WA, USA.

Jill M Johnsen (JM)

BloodWorks Northwest, University of Washington, Seattle, WA, USA.

Allison E Ashley-Koch (AE)

Duke Molecular Physiology Institute, Duke University Medical Center, Durham, NC, USA.
Department of Medicine, Duke University Medical Center, Durham, NC, USA.

Marilyn J Telen (MJ)

Department of Medicine, Duke University Medical Center, Durham, NC, USA.

Vivien A Sheehan (VA)

Department of Pediatrics, Division of Hematology/Oncology, Baylor College of Medicine, Houston, TX, USA.

John Blangero (J)

Department of Human Genetics, University of Texas Rio Grande Valley School of Medicine, Brownsville, TX, USA.
South Texas Diabetes and Obesity Institute, University of Texas Rio Grande Valley School of Medicine, Brownsville, TX, USA.

Joanne E Curran (JE)

Department of Human Genetics, University of Texas Rio Grande Valley School of Medicine, Brownsville, TX, USA.
South Texas Diabetes and Obesity Institute, University of Texas Rio Grande Valley School of Medicine, Brownsville, TX, USA.

Juan M Peralta (JM)

Department of Human Genetics, University of Texas Rio Grande Valley School of Medicine, Brownsville, TX, USA.
South Texas Diabetes and Obesity Institute, University of Texas Rio Grande Valley School of Medicine, Brownsville, TX, USA.

Courtney Montgomery (C)

Department of Genes and Human Disease, Oklahoma Medical Research Foundation, Oklahoma, OK, USA.

Wayne H-H Sheu (WH)

Division of Endocrinology and Metabolism, Department of Internal Medicine, Taichung Veterans General Hospital, Taichung, Taiwan.

Ren-Hua Chung (RH)

Institute of Population Health Sciences, National Health Research Institutes, Miaoli, Taiwan.

Karen Schwander (K)

Division of Biostatistics, Washington University School of Medicine, St. Louis, MO, USA.

Seyed M Nouraie (SM)

University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.

Victor R Gordeuk (VR)

University of Illinois at Chicago, Chicago, IL, USA.

Yingze Zhang (Y)

University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.

Charles Kooperberg (C)

Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.

Alexander P Reiner (AP)

Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Department of Epidemiology, University of Washington, Seattle, WA, USA.

Rebecca D Jackson (RD)

Division of Endocrinology, Diabetes and Metabolism, Ohio State University, Columbus, OH, USA.

Eugene R Bleecker (ER)

Division of Pharmacogenomics University of Arizona, Tucson, AR, USA.

Deborah A Meyers (DA)

Division of Pharmacogenomics University of Arizona, Tucson, AR, USA.

Xingnan Li (X)

Division of Genetics, Genomics and Precision Medicine, Department of Medicine, University of Arizona, Tucson, AR, USA.

Sayantan Das (S)

Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.

Ketian Yu (K)

Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA.

Jonathon LeFaive (J)

Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA.

Albert Smith (A)

Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA.

Tom Blackwell (T)

Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA.

Daniel Taliun (D)

Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA.
Center for Statistical Genetics, University of Michigan School of Public Health, Ann Arbor, MI, USA.

Sebastian Zollner (S)

Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA.

Lukas Forer (L)

Division of Genetics, Genomics and Precision Medicine, Department of Medicine, University of Arizona, Tucson, AR, USA.

Sebastian Schoenherr (S)

Institute of Genetic Epidemiology, Department of Genetics and Pharmacology, Medical University of Innsbruck, Innsbruck, Austria.

Christian Fuchsberger (C)

Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA.
Center for Statistical Genetics, University of Michigan School of Public Health, Ann Arbor, MI, USA.
Institute for Biomedicine, Eurac Research, Bolzano, Italy.

Anita Pandit (A)

Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA.

Matthew Zawistowski (M)

Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA.

Sachin Kheterpal (S)

Department of Anesthesiology, University of Michigan, Ann Arbor, MI, USA.

Chad M Brummett (CM)

Department of Anesthesiology, University of Michigan, Ann Arbor, MI, USA.

Pradeep Natarajan (P)

Program in Medical and Population Genetics, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Center for Genomic Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.

David Schlessinger (D)

Laboratory of Genetics, National Institute on Aging, US National Institutes of Health, Baltimore, MD, USA.

Seunggeun Lee (S)

Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA.

Hyun Min Kang (HM)

Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA.

Francesco Cucca (F)

Istituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche (CNR), Monserrato, Cagliari, Italy.
Dipartimento di Scienze Biomediche, Università degli Studi di Sassari, Sassari, Italy.

Oddgeir L Holmen (OL)

K.G. Jebsen Center for Genetic Epidemiology, Department of Public Health and Nursing, Faculty of Medicine and Health Sciences, Norwegian University of Science and Technology, NTNU, Trondheim, Norway.
HUNT Research Centre, Department of Public Health and Nursing, Norwegian University of Science and Technology, Levanger, Norway.

Bjørn O Åsvold (BO)

K.G. Jebsen Center for Genetic Epidemiology, Department of Public Health and Nursing, Faculty of Medicine and Health Sciences, Norwegian University of Science and Technology, NTNU, Trondheim, Norway.
HUNT Research Centre, Department of Public Health and Nursing, Norwegian University of Science and Technology, Levanger, Norway.
Department of Endocrinology, St. Olavs Hospital, Trondheim University Hospital, Trondheim, Norway.

Michael Boehnke (M)

Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA.
Center for Statistical Genetics, University of Michigan School of Public Health, Ann Arbor, MI, USA.

Sekar Kathiresan (S)

Harvard Medical School, Boston, MA, USA.
Center for Genomic Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
Broad Institute, Cambridge, MD, USA.

Goncalo R Abecasis (GR)

Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA.
Center for Statistical Genetics, University of Michigan School of Public Health, Ann Arbor, MI, USA.
Regeneron Pharmaceuticals, Tarrytown, NY, USA.

Y Eugene Chen (YE)

Department of Internal Medicine: Cardiology, University of Michigan, Ann Arbor, MI, USA. echenum@umich.edu.

Cristen J Willer (CJ)

Department of Internal Medicine: Cardiology, University of Michigan, Ann Arbor, MI, USA. cristen@umich.edu.
K.G. Jebsen Center for Genetic Epidemiology, Department of Public Health and Nursing, Faculty of Medicine and Health Sciences, Norwegian University of Science and Technology, NTNU, Trondheim, Norway. cristen@umich.edu.
Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA. cristen@umich.edu.
Department of Human Genetics, University of Michigan, Ann Arbor, MI, USA. cristen@umich.edu.

Kristian Hveem (K)

K.G. Jebsen Center for Genetic Epidemiology, Department of Public Health and Nursing, Faculty of Medicine and Health Sciences, Norwegian University of Science and Technology, NTNU, Trondheim, Norway. kristian.hveem@ntnu.no.
HUNT Research Centre, Department of Public Health and Nursing, Norwegian University of Science and Technology, Levanger, Norway. kristian.hveem@ntnu.no.
Levanger Hospital, Nord-Trøndelag Hospital Trust, Levanger, Norway. kristian.hveem@ntnu.no.

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