A Label-Free Optical Detection of Pathogens in Isopropanol as a First Step towards Real-Time Infection Prevention.

classification image processing machine learning microscopy optical detection pathogens

Journal

Biosensors
ISSN: 2079-6374
Titre abrégé: Biosensors (Basel)
Pays: Switzerland
ID NLM: 101609191

Informations de publication

Date de publication:
23 Dec 2020
Historique:
received: 17 11 2020
revised: 17 12 2020
accepted: 21 12 2020
entrez: 30 12 2020
pubmed: 31 12 2020
medline: 6 5 2021
Statut: epublish

Résumé

The detection of pathogens is a major public health issue. Every year, thousands of people die because of nosocomial infections. It is therefore important to be able to detect possible outbreaks as early as possible, especially in the hospital environment. Various pathogen detection techniques have already been demonstrated. However, most of them require expensive and specific equipment, and/or complex protocols, which, most of the time, involve biochemical reaction and labelling steps. In this paper, a new method that combines microscopic imaging and machine learning is described. The main benefits of this approach are to be low-cost, label-free and easy to integrate in any suitable medical device, such as hand hygiene dispensers. The suitability of this pathogen detection method is validated using four bacteria, both in PBS (Phosphate Buffered Saline) and in isopropanol. In particular, we demonstrated an efficient pathogenic detection that is sensible to changes in the composition of a mixture of pathogens, even in alcohol-based solutions.

Identifiants

pubmed: 33374711
pii: bios11010002
doi: 10.3390/bios11010002
pmc: PMC7822415
pii:
doi:

Substances chimiques

2-Propanol ND2M416302

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Bundesministerium für Bildung und Forschung
ID : 16ES0748
Organisme : Deutsche Forschungsgemeinschaft
ID : EXC 294

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Auteurs

Julie Claudinon (J)

Faculty of Biology, University of Freiburg, 79104 Freiburg, Germany.
Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg, Germany.

Siegfried Steltenkamp (S)

Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg, Germany.
Ophardt Hygiene-Technik GmbH + Co. KG, 47661 Issum, Germany.

Manuel Fink (M)

Faculty of Biology, University of Freiburg, 79104 Freiburg, Germany.
Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg, Germany.

Taras Sych (T)

Faculty of Biology, University of Freiburg, 79104 Freiburg, Germany.
Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg, Germany.

Benoît Verreman (B)

Ophardt Hygiene-Technik GmbH + Co. KG, 47661 Issum, Germany.
Telecom Physique Strasbourg, University of Strasbourg, 67000 Strasbourg, France.

Winfried Römer (W)

Faculty of Biology, University of Freiburg, 79104 Freiburg, Germany.
Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg, Germany.

Morgan Madec (M)

Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg, Germany.
Telecom Physique Strasbourg, University of Strasbourg, 67000 Strasbourg, France.
ICube Laboratory, University of Strasbourg, CNRS (UMR 7357), 67000 Strasbourg, France.

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