Systems models, phenomics and genomics: three pillars for developing high-yielding photosynthetically efficient crops.
Crop yield
HYPEC
genomics
model-guided breeding
phenomics
systems model
Journal
In silico plants
ISSN: 2517-5025
Titre abrégé: In Silico Plants
Pays: England
ID NLM: 101774033
Informations de publication
Date de publication:
2019
2019
Historique:
received:
23
10
2018
revised:
17
12
2018
accepted:
13
02
2019
entrez:
31
12
2020
pubmed:
1
1
2021
medline:
1
1
2021
Statut:
ppublish
Résumé
Recent years witnessed a stagnation in yield enhancement in major staple crops, which leads plant biologists and breeders to focus on an urgent challenge to dramatically increase crop yield to meet the growing food demand. Systems models have started to show their capacity in guiding crops improvement for greater biomass and grain yield production. Here we argue that systems models, phenomics and genomics combined are three pillars for the future breeding for high-yielding photosynthetically efficient crops (HYPEC). Briefly, systems models can be used to guide identification of breeding targets for a particular cultivar and define optimal physiological and architectural parameters for a particular crop to achieve high yield under defined environments. Phenomics can support collection of architectural, physiological, biochemical and molecular parameters in a high-throughput manner, which can be used to support both model validation and model parameterization. Genomic techniques can be used to accelerate crop breeding by enabling more efficient mapping between genotypic and phenotypic variation, and guide genome engineering or editing for model-designed traits. In this paper, we elaborate on these roles and how they can work synergistically to support future HYPEC breeding.
Identifiants
pubmed: 33381682
doi: 10.1093/insilicoplants/diy003
pii: ISP-01-01-diy003
pmc: PMC7731669
doi:
Types de publication
Journal Article
Review
Langues
eng
Informations de copyright
© The Author(s) 2019. Published by Oxford University Press on behalf of the Annals of Botany Company.
Déclaration de conflit d'intérêts
None declared.
Références
Ann Bot. 2003 Feb;91(3):361-71
pubmed: 12547689
J Exp Bot. 2006;57(1):149-60
pubmed: 16330527
New Phytol. 2017 Aug;215(3):1274-1286
pubmed: 28653341
Plant Methods. 2017 Jul 4;13:54
pubmed: 28690669
Science. 2016 Nov 18;354(6314):857-861
pubmed: 27856901
Science. 2009 Feb 13;323(5916):930-4
pubmed: 19150810
Proc Natl Acad Sci U S A. 2018 Jun 5;115(23):6058-6063
pubmed: 29784797
Plant Methods. 2018 Jan 18;14:6
pubmed: 29375647
J Exp Bot. 2015 Jun;66(12):3463-76
pubmed: 25795739
Plant Methods. 2015 Mar 11;11:17
pubmed: 25774207
Int J Biol Sci. 2013;9(2):164-73
pubmed: 23412138
Plant Cell. 2004 Dec;16(12):3304-25
pubmed: 15548738
PLoS Biol. 2018 Nov 1;16(11):e2005952
pubmed: 30383040
Plant Physiol. 2014 Apr 2;165(2):479-495
pubmed: 24696519
Cell. 2012 Jul 20;150(2):389-401
pubmed: 22817898
Mol Plant. 2017 Jul 5;10(7):918-929
pubmed: 28666688
Curr Opin Plant Biol. 2009 Apr;12(2):231-40
pubmed: 19282235
Plant Cell Environ. 2014 Jan;37(1):22-34
pubmed: 23937619
Funct Plant Biol. 2013 Mar;40(2):108-124
pubmed: 32481092
J Exp Bot. 2016 Nov;67(21):6021-6035
pubmed: 27702991
J Exp Bot. 2013 Oct;64(13):3965-81
pubmed: 24123453
Plant Methods. 2016 Feb 17;12:16
pubmed: 26889205
J Exp Bot. 2004 Nov;55(407):2447-60
pubmed: 15475373
Nat Rev Genet. 2011 Dec 29;13(2):85-96
pubmed: 22207165
Glob Chang Biol. 2017 Apr;23(4):1626-1635
pubmed: 27860122
Am J Bot. 2016 Feb;103(2):184-8
pubmed: 26865119
Genetics. 2018 Oct;210(2):477-497
pubmed: 30150289
Plant Biotechnol J. 2014 Aug;12(6):797-807
pubmed: 24854982
Plant Physiol. 2016 Mar;170(3):1176-88
pubmed: 26729797
Nat Commun. 2012;3:1293
pubmed: 23250423
Trends Plant Sci. 2003 Jul;8(7):330-4
pubmed: 12878017
Plant Physiol. 2017 Jan;173(1):614-626
pubmed: 28049858
Front Plant Sci. 2017 May 15;8:786
pubmed: 28555150
Plant Cell Rep. 2014 Apr;33(4):551-64
pubmed: 24442397
J Exp Bot. 2016 Nov;67(21):6125-6138
pubmed: 27707775
Cell. 2017 Oct 5;171(2):470-480.e8
pubmed: 28919077
Ann Bot. 2018 Apr 18;121(5):1079-1088
pubmed: 29509841
Nat Plants. 2017 Mar 20;3:17031
pubmed: 28319055
Environ Manage. 2008 Jun;41(6):949-58
pubmed: 18288519
Plant Methods. 2015 Aug 28;11:41
pubmed: 26322118
Sci Rep. 2015 Sep 02;5:13492
pubmed: 26328508
Plant Cell Environ. 2014 Jan;37(1):19-21
pubmed: 24004407
Plant Physiol. 2004 Feb;134(2):676-83
pubmed: 14739343
J Exp Bot. 2004 May;55(400):1167-75
pubmed: 15133059
Plant Physiol. 2003 Aug;132(4):2166-73
pubmed: 12913171
Crop Sci. 2002 Jan;42(1):122-131
pubmed: 11756262
Theor Appl Genet. 2003 Jan;106(2):326-31
pubmed: 12582859
Ann Bot. 2005 Jun;95(7):1131-43
pubmed: 15820987
Funct Plant Biol. 2011 Feb;38(2):127-138
pubmed: 32480869
J Exp Bot. 2005 Mar;56(413):967-76
pubmed: 15710636
BMC Plant Biol. 2011 Aug 31;11:123
pubmed: 21884586
J Exp Bot. 2017 Jul 20;68(16):4417-4431
pubmed: 28338782
Plant Physiol. 2008 Jul;147(3):969-77
pubmed: 18612074
Trends Plant Sci. 2011 Dec;16(12):635-44
pubmed: 22074787
J Exp Bot. 2007;58(2):351-60
pubmed: 17158111
Plant Cell Environ. 2016 May;39(5):1049-57
pubmed: 26523481
Nat Commun. 2015 Feb 05;6:6258
pubmed: 25651972
Glob Chang Biol. 2015 Mar;21(3):1328-41
pubmed: 25294087
Gene. 2015 Feb 15;557(1):71-81
pubmed: 25498907
Proc Natl Acad Sci U S A. 2014 Sep 30;111(39):E4127-36
pubmed: 25197087
Cell. 2015 Mar 26;161(1):56-66
pubmed: 25815985
PLoS One. 2013 Jun 19;8(6):e66428
pubmed: 23840465
Phytopathology. 2012 Jun;102(6):560-6
pubmed: 22568813
Annu Rev Plant Biol. 2010;61:421-42
pubmed: 20192739
Plant Cell Environ. 2017 Dec;40(12):2946-2957
pubmed: 28755407
Annu Rev Plant Biol. 2010;61:235-61
pubmed: 20192734
J Vis Exp. 2012 Dec 31;(70):
pubmed: 23299126
New Phytol. 2005 Jun;166(3):869-80
pubmed: 15869648
Nat Commun. 2014 Oct 08;5:5087
pubmed: 25295980
Plant Physiol. 2007 Oct;145(2):513-26
pubmed: 17720759
Curr Opin Plant Biol. 2016 Jun;31:162-71
pubmed: 27161822
J Exp Bot. 2012 Jan;63(1):489-502
pubmed: 21984647