Water and Life: The Medium is the Message.

Amino acid Glycolysis Metabolism Metabolite Oxidative phosphorylation Translation

Journal

Journal of molecular evolution
ISSN: 1432-1432
Titre abrégé: J Mol Evol
Pays: Germany
ID NLM: 0360051

Informations de publication

Date de publication:
02 2021
Historique:
received: 23 08 2020
accepted: 21 11 2020
pubmed: 12 1 2021
medline: 18 9 2021
entrez: 11 1 2021
Statut: ppublish

Résumé

Water, the most abundant compound on the surface of the Earth and probably in the universe, is the medium of biology, but is much more than that. Water is the most frequent actor in the chemistry of metabolism. Our quantitation here reveals that water accounts for 99.4% of metabolites in Escherichia coli by molar concentration. Between a third and a half of known biochemical reactions involve consumption or production of water. We calculated the chemical flux of water and observed that in the life of a cell, a given water molecule frequently and repeatedly serves as a reaction substrate, intermediate, cofactor, and product. Our results show that as an E. coli cell replicates in the presence of molecular oxygen, an average in vivo water molecule is chemically transformed or is mechanistically involved in catalysis ~ 3.7 times. We conclude that, for biological water, there is no distinction between medium and chemical participant. Chemical transformations of water provide a basis for understanding not only extant biochemistry, but the origins of life. Because the chemistry of water dominates metabolism and also drives biological synthesis and degradation, it seems likely that metabolism co-evolved with biopolymers, which helps to reconcile polymer-first versus metabolism-first theories for the origins of life.

Identifiants

pubmed: 33427903
doi: 10.1007/s00239-020-09978-6
pii: 10.1007/s00239-020-09978-6
pmc: PMC7884305
doi:

Substances chimiques

Organic Chemicals 0
Water 059QF0KO0R

Types de publication

Journal Article Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

2-11

Références

Mol Cell. 2016 Aug 4;63(3):445-56
pubmed: 27373333
Biochem J. 1995 Nov 15;312 ( Pt 1):163-7
pubmed: 7492307
Biochemistry. 1988 Jun 14;27(12):4538-41
pubmed: 3166998
Angew Chem Int Ed Engl. 2019 Aug 12;58(33):11253-11256
pubmed: 31206983
Nat Chem Biol. 2009 Aug;5(8):593-9
pubmed: 19561621
Microbiol Rev. 1984 Sep;48(3):222-71
pubmed: 6387427
Nucleic Acids Res. 2017 Jan 4;45(D1):D1112-D1116
pubmed: 27789699
Science. 1989 Jun 16;244(4910):1333-7
pubmed: 2734612
Data Brief. 2017 Apr 29;12:438-441
pubmed: 28516140
Chem Biodivers. 2007 Sep;4(9):2031-122
pubmed: 17886859
Life (Basel). 2019 Jun 06;9(2):
pubmed: 31174398
Proc Natl Acad Sci U S A. 2009 Dec 22;106(51):21465-71
pubmed: 20018695
Bioessays. 2013 Dec;35(12):1050-5
pubmed: 24114984
Angew Chem Int Ed Engl. 2015 Aug 17;54(34):9871-5
pubmed: 26201989
Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):13327-13335
pubmed: 28592654
Curr Opin Struct Biol. 2012 Jun;22(3):262-72
pubmed: 22595008
Life (Basel). 2016 Jul 26;6(3):
pubmed: 27472365
Trends Biochem Sci. 2002 Mar;27(3):154-60
pubmed: 11893513
Orig Life Evol Biosph. 1993 Feb;23(1):3-10
pubmed: 11536525
Adv Protein Chem. 1959;14:1-63
pubmed: 14404936
J Mol Evol. 2018 Dec;86(9):598-610
pubmed: 30456440
Perspect Biol Med. 1971 Winter;14(2):239-49
pubmed: 5546252
Nucleic Acids Res. 2015 Jan;43(Database issue):D453-8
pubmed: 25324316
Nucleic Acids Res. 2018 Jan 4;46(D1):D608-D617
pubmed: 29140435
Proc Natl Acad Sci U S A. 2019 Aug 13;116(33):16338-16346
pubmed: 31358633
Nat Biotechnol. 2000 Nov;18(11):1121-2
pubmed: 11062388
Biochemistry (Mosc). 2015 May;80(5):559-64
pubmed: 26071773
Annu Rev Microbiol. 2015;69:49-69
pubmed: 26132790
Antonie Van Leeuwenhoek. 1973;39(3):545-65
pubmed: 4148026
Curr Opin Chem Biol. 2011 Oct;15(5):595-605
pubmed: 21865075
Eur J Biochem. 1998 Jan 15;251(1-2):538-43
pubmed: 9492330
Nucleic Acids Res. 2010 Jan;38(Database issue):D142-8
pubmed: 19843607
Chemphyschem. 2020 Feb 17;21(4):313-320
pubmed: 31904135
Proc Natl Acad Sci U S A. 2007 Aug 21;104(34):13638-42
pubmed: 17698812
Eur J Biochem. 1976 Aug 1;67(1):115-22
pubmed: 786616
Nucleic Acids Res. 2008 Jan;36(Database issue):D480-4
pubmed: 18077471
Biochemistry. 1997 Oct 28;36(43):13143-7
pubmed: 9376374
Microbiol Rev. 1995 Mar;59(1):48-62
pubmed: 7708012
Nucleic Acids Res. 2018 Jan 4;46(D1):D618-D623
pubmed: 29106569
Arch Biochem Biophys. 2019 Nov 15;676:108128
pubmed: 31622585

Auteurs

Moran Frenkel-Pinter (M)

NASA Center for the Origins of Life, Atlanta, GA, USA.
NSF-NASA Center of Chemical Evolution, Atlanta, GA, USA.
School of Chemistry and Biochemistry, Georgia Institute of Technology, 315 Ferst Drive NW, Atlanta, GA, 30332-0400, USA.

Vahab Rajaei (V)

NASA Center for the Origins of Life, Atlanta, GA, USA.
NSF-NASA Center of Chemical Evolution, Atlanta, GA, USA.
School of Chemistry and Biochemistry, Georgia Institute of Technology, 315 Ferst Drive NW, Atlanta, GA, 30332-0400, USA.

Jennifer B Glass (JB)

NASA Center for the Origins of Life, Atlanta, GA, USA.
School of Earth and Atmospheric Science, Georgia Institute of Technology, 311 Ferst Drive NW, Atlanta, GA, 30332-0340, USA.

Nicholas V Hud (NV)

NASA Center for the Origins of Life, Atlanta, GA, USA.
NSF-NASA Center of Chemical Evolution, Atlanta, GA, USA.
School of Chemistry and Biochemistry, Georgia Institute of Technology, 315 Ferst Drive NW, Atlanta, GA, 30332-0400, USA.

Loren Dean Williams (LD)

NASA Center for the Origins of Life, Atlanta, GA, USA. loren.williams@chemistry.gatech.edu.
NSF-NASA Center of Chemical Evolution, Atlanta, GA, USA. loren.williams@chemistry.gatech.edu.
School of Chemistry and Biochemistry, Georgia Institute of Technology, 315 Ferst Drive NW, Atlanta, GA, 30332-0400, USA. loren.williams@chemistry.gatech.edu.

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Classifications MeSH