A-to-I RNA editing in honeybees shows signals of adaptation and convergent evolution.

Evolutionary Biology Genetic Engineering Genetics Genomics

Journal

iScience
ISSN: 2589-0042
Titre abrégé: iScience
Pays: United States
ID NLM: 101724038

Informations de publication

Date de publication:
22 Jan 2021
Historique:
received: 04 09 2020
revised: 18 11 2020
accepted: 17 12 2020
entrez: 18 1 2021
pubmed: 19 1 2021
medline: 19 1 2021
Statut: epublish

Résumé

Social insects exhibit extensive phenotypic diversities among the genetically similar individuals, suggesting a role for the epigenetic regulations beyond the genome level. The ADAR-mediated adenosine-to-inosine (A-to-I) RNA editing, an evolutionarily conserved mechanism, facilitates adaptive evolution by expanding proteomic diversities. Here, we characterize the A-to-I RNA editome of honeybees (

Identifiants

DOI: 10.1016/j.isci.2020.101983 PMID: 33458624 PMC: PMC7797907
pubmed: 33458624
doi: 10.1016/j.isci.2020.101983
pii: S2589-0042(20)31180-9
pmc: PMC7797907
doi:

Types de publication

Journal Article

Langues

eng

Pagination

101983

Informations de copyright

© 2020 The Author(s).

Déclaration de conflit d'intérêts

The authors declare no competing interests.

Références

Nat Rev Genet. 2001 Nov;2(11):869-78
pubmed: 11715042
Genome Res. 2015 Jan;25(1):66-75
pubmed: 25373143
Nat Genet. 2017 Jan;49(1):146-151
pubmed: 27893733
Nat Rev Mol Cell Biol. 2016 Feb;17(2):83-96
pubmed: 26648264
Proc Natl Acad Sci U S A. 1999 May 25;96(11):6048-53
pubmed: 10339539
Science. 2012 Feb 17;335(6070):848-51
pubmed: 22223739
Nat Commun. 2016 Jan 27;7:10512
pubmed: 26813350
PLoS Genet. 2017 Jul 26;13(7):e1006931
pubmed: 28746393
Proc Natl Acad Sci U S A. 1962 Apr 15;48:613-6
pubmed: 13865603
Annu Rev Biochem. 2010;79:321-49
pubmed: 20192758
Nucleic Acids Res. 2019 Jan 10;47(1):3-14
pubmed: 30462291
Mol Biol Evol. 2015 Dec;32(12):3143-57
pubmed: 26341297
Proc Natl Acad Sci U S A. 2014 Mar 11;111(10):3769-74
pubmed: 24567376
Cell. 2017 Apr 6;169(2):191-202.e11
pubmed: 28388405
Nat Commun. 2012 Apr 24;3:790
pubmed: 22531175
PLoS Biol. 2018 Jul 20;16(7):e2003903
pubmed: 30028832
Genome Biol. 2012 Apr 23;13(4):26
pubmed: 22524474
Elife. 2015 Jan 08;4:
pubmed: 25569156
RNA. 2000 Jul;6(7):1004-18
pubmed: 10917596
RNA. 2007 Apr;13(4):463-7
pubmed: 17255198
Hum Genet. 2017 Sep;136(9):1265-1278
pubmed: 28913566
Genome Res. 2019 Nov;29(11):1766-1776
pubmed: 31515285
Genome Biol. 2012 Dec 28;13(12):252
pubmed: 23273215
Annu Rev Biochem. 2002;71:817-46
pubmed: 12045112
Genome Biol. 2007;8(2):R29
pubmed: 17326827
Nat Struct Mol Biol. 2013 Nov;20(11):1333-9
pubmed: 24077224
Hum Mol Genet. 2009 Dec 15;18(24):4801-7
pubmed: 19776031
Nat Biotechnol. 2004 Aug;22(8):1001-5
pubmed: 15258596
Bioessays. 2013 Jun;35(6):571-8
pubmed: 23580343
PLoS Biol. 2004 Dec;2(12):e391
pubmed: 15534692
PLoS Genet. 2017 Mar 10;13(3):e1006648
pubmed: 28282384
Mol Biol Evol. 2017 Aug 1;34(8):1890-1901
pubmed: 28453786
Genome Res. 2004 Sep;14(9):1719-25
pubmed: 15342557
PLoS Genet. 2014 Apr 10;10(4):e1004274
pubmed: 24722121
Genome Res. 2017 Mar;27(3):462-470
pubmed: 28031250
PLoS Genet. 2017 Feb 6;13(2):e1006563
pubmed: 28166241
Genome Biol. 2017 Oct 2;18(1):185
pubmed: 28969707
RNA. 2006 Oct;12(10):1802-9
pubmed: 16940548
Nat Rev Genet. 2014 Oct;15(10):677-88
pubmed: 25200663
Nat Rev Genet. 2018 Aug;19(8):473-490
pubmed: 29692414
Genome Res. 2004 Dec;14(12):2379-87
pubmed: 15545495
BMC Evol Biol. 2007 Jun 27;7:98
pubmed: 17597521
Nat Commun. 2019 Nov 27;10(1):5411
pubmed: 31776345
Methods. 2016 Sep 1;107:42-7
pubmed: 27208508
Annu Rev Genet. 2012;46:97-119
pubmed: 22934646
Nat Neurosci. 2012 Oct;15(10):1371-3
pubmed: 22983211
Nat Commun. 2016 Nov 29;7:13659
pubmed: 27897175
Nat Commun. 2017 Nov 17;8(1):1570
pubmed: 29146998
RNA Biol. 2015;12(12):1391-401
pubmed: 26512413
Mol Cell. 2012 Jul 13;47(1):27-37
pubmed: 22658416
Genome Res. 2012 Aug;22(8):1533-40
pubmed: 22499667
Nucleic Acids Res. 2004 Apr 15;32(7):2113-22
pubmed: 15087490
Genome Res. 2012 Jul;22(7):1255-65
pubmed: 22499666
Bioessays. 2009 Oct;31(10):1137-45
pubmed: 19708020
Nature. 2011 Mar 24;471(7339):473-9
pubmed: 21179090
Nature. 1999 May 6;399(6731):75-80
pubmed: 10331393
PLoS Genet. 2016 Jul 28;12(7):e1006191
pubmed: 27467689
Nat Commun. 2019 Apr 8;10(1):1605
pubmed: 30962428
Nat Commun. 2014 Sep 30;5:4943
pubmed: 25266559
Genome Biol Evol. 2020 Apr 1;12(4):345-357
pubmed: 32145015
Nucleic Acids Res. 2011 Sep 1;39(16):7249-62
pubmed: 21622951
Nucleic Acids Res. 2017 Jan 4;45(D1):D750-D757
pubmed: 27587585
J Exp Biol. 2015 Jun;218(Pt 12):1812-21
pubmed: 26085659

Auteurs

Yuange Duan (Y)

State Key Laboratory of Protein and Plant Gene Research, Center for Bioinformatics, School of Life Sciences, Peking University, Beijing, 100871, China.
Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, 100871, China.

Shengqian Dou (S)

State Key Laboratory of Protein and Plant Gene Research, Center for Bioinformatics, School of Life Sciences, Peking University, Beijing, 100871, China.

Hagit T Porath (HT)

The Mina and Everard Goodman Faculty of Life Sciences, Bar Ilan University, Ramat-Gan 52900, Israel.

Jiaxing Huang (J)

Key Laboratory for Insect-Pollinator Biology of the Ministry of Agriculture and Rural Affairs, Institute of Apicultural Research, Chinese Academy of Agricultural Sciences, Beijing, 100093, China.

Eli Eisenberg (E)

Raymond and Beverly Sackler School of Physics and Astronomy and Sagol School of Neuroscience, Tel Aviv University, Tel Aviv 6997801, Israel.

Jian Lu (J)

State Key Laboratory of Protein and Plant Gene Research, Center for Bioinformatics, School of Life Sciences, Peking University, Beijing, 100871, China.

Classifications MeSH