Automatic classification of mice vocalizations using Machine Learning techniques and Convolutional Neural Networks.


Journal

PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081

Informations de publication

Date de publication:
2021
Historique:
received: 03 04 2020
accepted: 14 12 2020
entrez: 19 1 2021
pubmed: 20 1 2021
medline: 8 5 2021
Statut: epublish

Résumé

Ultrasonic vocalizations (USVs) analysis is a well-recognized tool to investigate animal communication. It can be used for behavioral phenotyping of murine models of different disorders. The USVs are usually recorded with a microphone sensitive to ultrasound frequencies and they are analyzed by specific software. Different calls typologies exist, and each ultrasonic call can be manually classified, but the qualitative analysis is highly time-consuming. Considering this framework, in this work we proposed and evaluated a set of supervised learning methods for automatic USVs classification. This could represent a sustainable procedure to deeply analyze the ultrasonic communication, other than a standardized analysis. We used manually built datasets obtained by segmenting the USVs audio tracks analyzed with the Avisoft software, and then by labelling each of them into 10 representative classes. For the automatic classification task, we designed a Convolutional Neural Network that was trained receiving as input the spectrogram images associated to the segmented audio files. In addition, we also tested some other supervised learning algorithms, such as Support Vector Machine, Random Forest and Multilayer Perceptrons, exploiting informative numerical features extracted from the spectrograms. The performance showed how considering the whole time/frequency information of the spectrogram leads to significantly higher performance than considering a subset of numerical features. In the authors' opinion, the experimental results may represent a valuable benchmark for future work in this research field.

Identifiants

pubmed: 33465075
doi: 10.1371/journal.pone.0244636
pii: PONE-D-20-09612
pmc: PMC7815145
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0244636

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist.

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Auteurs

Marika Premoli (M)

Department of Molecular and Translational Medicine, University of Brescia, Brescia, Italy.

Daniele Baggi (D)

Department of Information Engineering, University of Brescia, Brescia, Italy.

Marco Bianchetti (M)

Department of Information Engineering, University of Brescia, Brescia, Italy.

Alessandro Gnutti (A)

Department of Information Engineering, University of Brescia, Brescia, Italy.

Marco Bondaschi (M)

Department of Information Engineering, University of Brescia, Brescia, Italy.

Andrea Mastinu (A)

Department of Molecular and Translational Medicine, University of Brescia, Brescia, Italy.

Pierangelo Migliorati (P)

Department of Information Engineering, University of Brescia, Brescia, Italy.

Alberto Signoroni (A)

Department of Information Engineering, University of Brescia, Brescia, Italy.

Riccardo Leonardi (R)

Department of Information Engineering, University of Brescia, Brescia, Italy.

Maurizio Memo (M)

Department of Molecular and Translational Medicine, University of Brescia, Brescia, Italy.

Sara Anna Bonini (SA)

Department of Molecular and Translational Medicine, University of Brescia, Brescia, Italy.

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Classifications MeSH