Relationship between CD4 T cell turnover, cellular differentiation and HIV persistence during ART.


Journal

PLoS pathogens
ISSN: 1553-7374
Titre abrégé: PLoS Pathog
Pays: United States
ID NLM: 101238921

Informations de publication

Date de publication:
01 2021
Historique:
received: 30 07 2020
accepted: 04 12 2020
revised: 29 01 2021
pubmed: 20 1 2021
medline: 27 4 2021
entrez: 19 1 2021
Statut: epublish

Résumé

The precise role of CD4 T cell turnover in maintaining HIV persistence during antiretroviral therapy (ART) has not yet been well characterized. In resting CD4 T cell subpopulations from 24 HIV-infected ART-suppressed and 6 HIV-uninfected individuals, we directly measured cellular turnover by heavy water labeling, HIV reservoir size by integrated HIV-DNA (intDNA) and cell-associated HIV-RNA (caRNA), and HIV reservoir clonality by proviral integration site sequencing. Compared to HIV-negatives, ART-suppressed individuals had similar fractional replacement rates in all subpopulations, but lower absolute proliferation rates of all subpopulations other than effector memory (TEM) cells, and lower plasma IL-7 levels (p = 0.0004). Median CD4 T cell half-lives decreased with cell differentiation from naïve to TEM cells (3 years to 3 months, p<0.001). TEM had the fastest replacement rates, were most highly enriched for intDNA and caRNA, and contained the most clonal proviral expansion. Clonal proviruses detected in less mature subpopulations were more expanded in TEM, suggesting that they were maintained through cell differentiation. Earlier ART initiation was associated with lower levels of intDNA, caRNA and fractional replacement rates. In conclusion, circulating integrated HIV proviruses appear to be maintained both by slow turnover of immature CD4 subpopulations, and by clonal expansion as well as cell differentiation into effector cells with faster replacement rates.

Identifiants

pubmed: 33465157
doi: 10.1371/journal.ppat.1009214
pii: PPATHOGENS-D-20-01673
pmc: PMC7846027
doi:

Substances chimiques

Anti-Retroviral Agents 0
DNA, Viral 0

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e1009214

Subventions

Organisme : NIGMS NIH HHS
ID : T32 GM007618
Pays : United States
Organisme : NIAID NIH HHS
ID : K24 AI145806
Pays : United States
Organisme : NIDDK NIH HHS
ID : R01 DK108349
Pays : United States
Organisme : NIDDK NIH HHS
ID : R01 DK120387
Pays : United States
Organisme : NIAID NIH HHS
ID : UM1 AI126611
Pays : United States
Organisme : NIAID NIH HHS
ID : R01 AI132128
Pays : United States
Organisme : NIAID NIH HHS
ID : P30 AI027763
Pays : United States
Organisme : NIAID NIH HHS
ID : P30 AI027757
Pays : United States
Organisme : NIAID NIH HHS
ID : K25 AI155224
Pays : United States
Organisme : NIAID NIH HHS
ID : R01 AI116368
Pays : United States

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist.

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Auteurs

Charline Bacchus-Souffan (C)

Division of Experimental Medicine, Department of Medicine, University of California, San Francisco, California, United States of America.

Mark Fitch (M)

Department of Nutritional Sciences and Toxicology, University of California, Berkeley, California, United States of America.

Jori Symons (J)

The Peter Doherty Institute for Infection and Immunity, University of Melbourne and Royal Melbourne Hospital, Melbourne, Australia.

Mohamed Abdel-Mohsen (M)

The Wistar Institute, Philadelphia, Pennsylvania, United States of America.

Daniel B Reeves (DB)

Vaccine and Infectious Diseases Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.

Rebecca Hoh (R)

Division of HIV, Infectious Diseases and Global Medicine, Department of Medicine, Zuckerberg San Francisco General Hospital, University of California, San Francisco, California, United States of America.

Mars Stone (M)

Vitalant Research Institute and Department of Laboratory Medicine at the University of California, San Francisco, California, United States of America.

Joseph Hiatt (J)

Medical Scientist Training Program & Biomedical Sciences Graduate Program, University of California, San Francisco, California, United States of America.

Peggy Kim (P)

Infectious Diseases Section, Medical Service, San Francisco Veterans Affairs Medical Center, California, United States of America.

Abha Chopra (A)

Institute for Immunology and Infectious Diseases, Murdoch University, Perth, Australia.
Center for Translational Immunology and Infectious Diseases, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.

Haelee Ahn (H)

Division of Experimental Medicine, Department of Medicine, University of California, San Francisco, California, United States of America.

Vanessa A York (VA)

Division of Experimental Medicine, Department of Medicine, University of California, San Francisco, California, United States of America.

Daniel L Cameron (DL)

Division of Bioinformatics, Walter & Eliza Hall Institute of Medical Research, Parkville, Australia.

Frederick M Hecht (FM)

Division of HIV, Infectious Diseases and Global Medicine, Department of Medicine, Zuckerberg San Francisco General Hospital, University of California, San Francisco, California, United States of America.

Jeffrey N Martin (JN)

Division of HIV, Infectious Diseases and Global Medicine, Department of Medicine, Zuckerberg San Francisco General Hospital, University of California, San Francisco, California, United States of America.

Steven A Yukl (SA)

Division of HIV, Infectious Diseases and Global Medicine, Department of Medicine, Zuckerberg San Francisco General Hospital, University of California, San Francisco, California, United States of America.
Infectious Diseases Section, Medical Service, San Francisco Veterans Affairs Medical Center, California, United States of America.

Simon Mallal (S)

Institute for Immunology and Infectious Diseases, Murdoch University, Perth, Australia.
Center for Translational Immunology and Infectious Diseases, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.

Paul U Cameron (PU)

The Peter Doherty Institute for Infection and Immunity, University of Melbourne and Royal Melbourne Hospital, Melbourne, Australia.

Steven G Deeks (SG)

Division of HIV, Infectious Diseases and Global Medicine, Department of Medicine, Zuckerberg San Francisco General Hospital, University of California, San Francisco, California, United States of America.

Joshua T Schiffer (JT)

Vaccine and Infectious Diseases Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.

Sharon R Lewin (SR)

The Peter Doherty Institute for Infection and Immunity, University of Melbourne and Royal Melbourne Hospital, Melbourne, Australia.

Marc K Hellerstein (MK)

Department of Nutritional Sciences and Toxicology, University of California, Berkeley, California, United States of America.

Joseph M McCune (JM)

Global Health Innovative Technology Solutions/HIV Frontiers, Bill & Melinda Gates Foundation, Seattle, Washington, United States of America.

Peter W Hunt (PW)

Division of Experimental Medicine, Department of Medicine, University of California, San Francisco, California, United States of America.

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