Epidemiological modeling in StochSS Live!


Journal

Bioinformatics (Oxford, England)
ISSN: 1367-4811
Titre abrégé: Bioinformatics
Pays: England
ID NLM: 9808944

Informations de publication

Date de publication:
09 Sep 2021
Historique:
received: 22 09 2020
revised: 20 01 2021
accepted: 26 01 2021
medline: 30 1 2021
pubmed: 30 1 2021
entrez: 29 1 2021
Statut: ppublish

Résumé

We present StochSS Live!, a web-based service for modeling, simulation and analysis of a wide range of mathematical, biological and biochemical systems. Using an epidemiological model of COVID-19, we demonstrate the power of StochSS Live! to enable researchers to quickly develop a deterministic or a discrete stochastic model, infer its parameters and analyze the results. StochSS Live! is freely available at https://live.stochss.org/. Supplementary data are available at Bioinformatics online.

Identifiants

pubmed: 33512399
pii: 6123781
doi: 10.1093/bioinformatics/btab061
pmc: PMC7929247
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

2787-2788

Subventions

Organisme : NIBIB NIH HHS
ID : R01 EB014877
Pays : United States
Organisme : NIBIB NIH HHS
ID : 2-R01-EB014877-04A1
Pays : United States

Informations de copyright

© The Author(s) 2021. Published by Oxford University Press.

Auteurs

Richard Jiang (R)

Department of Computer Science, University of California-Santa Barbara, Santa Barbara, CA 93117, USA.

Bruno Jacob (B)

Department of Mechanical Engineering, University of California-Santa Barbara, Santa Barbara, CA 93106, USA.

Matthew Geiger (M)

National Environmental Modeling and Analysis Center (NEMAC), University of North Carolina at Asheville, Asheville, NC 28804, USA.

Sean Matthew (S)

National Environmental Modeling and Analysis Center (NEMAC), University of North Carolina at Asheville, Asheville, NC 28804, USA.

Bryan Rumsey (B)

National Environmental Modeling and Analysis Center (NEMAC), University of North Carolina at Asheville, Asheville, NC 28804, USA.

Prashant Singh (P)

Department of Information Technology, Uppsala University, Uppsala 751 05, Sweden.

Fredrik Wrede (F)

Department of Information Technology, Uppsala University, Uppsala 751 05, Sweden.

Tau-Mu Yi (TM)

Department of Molecular, Cellular and Developmental Biology, University of California-Santa Barbara, Santa Barbara, CA 93106, USA.

Brian Drawert (B)

Department of Computer Science, University of North Carolina at Asheville, Asheville, NC 28804, USA.

Andreas Hellander (A)

Department of Information Technology, Uppsala University, Uppsala 751 05, Sweden.

Linda Petzold (L)

Department of Computer Science, University of California-Santa Barbara, Santa Barbara, CA 93117, USA.
Department of Mechanical Engineering, University of California-Santa Barbara, Santa Barbara, CA 93106, USA.

Classifications MeSH