Quantifying epidemiological drivers of gambiense human African Trypanosomiasis across the Democratic Republic of Congo.
Journal
PLoS computational biology
ISSN: 1553-7358
Titre abrégé: PLoS Comput Biol
Pays: United States
ID NLM: 101238922
Informations de publication
Date de publication:
01 2021
01 2021
Historique:
received:
23
06
2020
accepted:
12
11
2020
revised:
22
02
2021
pubmed:
30
1
2021
medline:
18
5
2021
entrez:
29
1
2021
Statut:
epublish
Résumé
Gambiense human African trypanosomiasis (gHAT) is a virulent disease declining in burden but still endemic in West and Central Africa. Although it is targeted for elimination of transmission by 2030, there remain numerous questions about the drivers of infection and how these vary geographically. In this study we focus on the Democratic Republic of Congo (DRC), which accounted for 84% of the global case burden in 2016, to explore changes in transmission across the country and elucidate factors which may have contributed to the persistence of disease or success of interventions in different regions. We present a Bayesian fitting methodology, applied to 168 endemic health zones (∼100,000 population size), which allows for calibration of a mechanistic gHAT model to case data (from the World Health Organization HAT Atlas) in an adaptive and automated framework. It was found that the model needed to capture improvements in passive detection to match observed trends in the data within former Bandundu and Bas Congo provinces indicating these regions have substantially reduced time to detection. Health zones in these provinces generally had longer burn-in periods during fitting due to additional model parameters. Posterior probability distributions were found for a range of fitted parameters in each health zone; these included the basic reproduction number estimates for pre-1998 (R0) which was inferred to be between 1 and 1.14, in line with previous gHAT estimates, with higher median values typically in health zones with more case reporting in the 2000s. Previously, it was not clear whether a fall in active case finding in the period contributed to the declining case numbers. The modelling here accounts for variable screening and suggests that underlying transmission has also reduced greatly-on average 96% in former Equateur, 93% in former Bas Congo and 89% in former Bandundu-Equateur and Bandundu having had the highest case burdens in 2000. This analysis also sets out a framework to enable future predictions for the country.
Identifiants
pubmed: 33513134
doi: 10.1371/journal.pcbi.1008532
pii: PCOMPBIOL-D-20-01092
pmc: PMC7899378
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
e1008532Déclaration de conflit d'intérêts
The authors have declared that no competing interests exist.
Références
PLoS Negl Trop Dis. 2020 Oct 16;14(10):e0008270
pubmed: 33064783
PLoS Negl Trop Dis. 2017 Jan 5;11(1):e0005162
pubmed: 28056016
PLoS Negl Trop Dis. 2015 Aug 12;9(8):e0003727
pubmed: 26267667
Int J Health Geogr. 2010 Nov 01;9:57
pubmed: 21040555
World Health Organ Tech Rep Ser. 2013;(984):1-237
pubmed: 24552089
PLoS Negl Trop Dis. 2017 Nov 13;11(11):e0006060
pubmed: 29131822
Parasitology. 2011 Apr;138(4):516-26
pubmed: 21078220
PLoS Negl Trop Dis. 2017 Jul 27;11(7):e0005792
pubmed: 28750007
PLoS Negl Trop Dis. 2020 Apr 9;14(4):e0008033
pubmed: 32271755
Epidemics. 2017 Mar;18:101-112
pubmed: 28279451
PLoS Negl Trop Dis. 2012 Jan;6(1):e1467
pubmed: 22272367
Parasit Vectors. 2015 Oct 22;8:532
pubmed: 26490248
PLoS Negl Trop Dis. 2015 Jun 09;9(6):e0003785
pubmed: 26056823
PLoS Negl Trop Dis. 2008;2(12):e303
pubmed: 19104656
Med Vet Entomol. 1998 Apr;12(2):169-80
pubmed: 9622371
Int J Health Geogr. 2014 Feb 11;13:4
pubmed: 24517513
PLoS Negl Trop Dis. 2018 Dec 6;12(12):e0006890
pubmed: 30521525
PLoS Negl Trop Dis. 2019 Oct 28;13(10):e0007838
pubmed: 31658269
Gates Open Res. 2019 Oct 7;3:1553
pubmed: 32411945
Acta Trop. 2003 Oct;88(2):161-5
pubmed: 14516928
Int J Health Geogr. 2015 Jun 06;14:20
pubmed: 26047813
Clin Infect Dis. 2018 Jun 1;66(suppl_4):S286-S292
pubmed: 29860287
Trends Parasitol. 2018 Mar;34(3):197-207
pubmed: 29396200
PLoS Negl Trop Dis. 2015 Aug 12;9(8):e0003822
pubmed: 26267814
Parasitology. 1988 Aug;97 ( Pt 1):193-212
pubmed: 3174235
Trends Parasitol. 2016 Mar;32(3):230-241
pubmed: 26826783
PLoS Negl Trop Dis. 2020 May 21;14(5):e0008261
pubmed: 32437391
PLoS Negl Trop Dis. 2020 Jan 21;14(1):e0007976
pubmed: 31961872
Lancet Glob Health. 2017 Jan;5(1):e69-e79
pubmed: 27884709
PLoS Negl Trop Dis. 2011 Jul;5(7):e1233
pubmed: 21750745
Lancet. 2003 Nov 1;362(9394):1469-80
pubmed: 14602444
BMC Res Notes. 2015 Jul 04;8:292
pubmed: 26140922