XABOOM: An X-ray Absorption Benchmark of Organic Molecules Based on Carbon, Nitrogen, and Oxygen 1s → π* Transitions.


Journal

Journal of chemical theory and computation
ISSN: 1549-9626
Titre abrégé: J Chem Theory Comput
Pays: United States
ID NLM: 101232704

Informations de publication

Date de publication:
09 Mar 2021
Historique:
pubmed: 6 2 2021
medline: 6 2 2021
entrez: 5 2 2021
Statut: ppublish

Résumé

The performance of several standard and popular approaches for calculating X-ray absorption spectra at the carbon, nitrogen, and oxygen K-edges of 40 primarily organic molecules up to the size of guanine has been evaluated, focusing on the low-energy and intense 1s → π* transitions. Using results obtained with CVS-ADC(2)-x and fc-CVS-EOM-CCSD as benchmark references, we investigate the performance of CC2, ADC(2), ADC(3/2), and commonly adopted density functional theory (DFT)-based approaches. Here, focus is on

Identifiants

pubmed: 33544612
doi: 10.1021/acs.jctc.0c01082
pmc: PMC8023667
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

1618-1637

Références

Phys Chem Chem Phys. 2020 Feb 7;22(5):2642-2647
pubmed: 31478538
Phys Rev Lett. 2006 Oct 6;97(14):143001
pubmed: 17155244
J Chem Phys. 2013 Dec 7;139(21):211102
pubmed: 24320357
J Chem Phys. 2005 Nov 15;123(19):194103
pubmed: 16321072
J Comput Chem. 2007 Sep;28(12):2067-74
pubmed: 17436256
J Comput Chem. 2013 Oct 5;34(26):2293-2309
pubmed: 24159628
J Chem Phys. 2012 Nov 28;137(20):204106
pubmed: 23205980
Phys Chem Chem Phys. 2013 Jan 28;15(4):1310-8
pubmed: 23232557
J Comput Chem. 2020 Jul 15;41(19):1781-1789
pubmed: 32394459
Phys Rev Lett. 2020 Jul 17;125(3):037404
pubmed: 32745427
Phys Chem Chem Phys. 2016 Jan 7;18(1):566-83
pubmed: 26619162
J Chem Phys. 2015 Nov 14;143(18):181103
pubmed: 26567637
Phys Chem Chem Phys. 2019 Aug 15;21(32):17959-17970
pubmed: 31384854
J Chem Phys. 2004 Jun 22;120(24):11449-64
pubmed: 15268179
J Chem Theory Comput. 2017 Nov 14;13(11):5552-5559
pubmed: 28937757
Chem Rev. 2018 Aug 8;118(15):7208-7248
pubmed: 29894157
Phys Rev Lett. 2006 Jun 2;96(21):215502
pubmed: 16803246
J Comput Chem. 2014 Oct 5;35(26):1900-15
pubmed: 25130619
J Chem Phys. 2018 Oct 7;149(13):131101
pubmed: 30292196
J Phys Chem Lett. 2020 Oct 1;11(19):8314-8321
pubmed: 32897075
J Chem Theory Comput. 2019 Jan 8;15(1):325-337
pubmed: 30495950
J Chem Theory Comput. 2015 Jul 14;11(7):2994-9
pubmed: 26575736
Wiley Interdiscip Rev Comput Mol Sci. 2014 May;4(3):269-284
pubmed: 25309629
J Chem Phys. 2014 Sep 28;141(12):124116
pubmed: 25273421
Nat Commun. 2019 Oct 18;10(1):4761
pubmed: 31628306
J Chem Theory Comput. 2012 Sep 11;8(9):3284-92
pubmed: 26605735
J Chem Theory Comput. 2015 Sep 8;11(9):4146-53
pubmed: 26575909
Science. 2017 Jan 6;355(6320):49-52
pubmed: 28059761
J Chem Phys. 2006 Mar 7;124(9):94105
pubmed: 16526843
J Chem Phys. 2007 May 21;126(19):191109
pubmed: 17523789
J Chem Phys. 2018 Aug 14;149(6):064111
pubmed: 30111144
Faraday Discuss. 2016 Dec 16;194:117-145
pubmed: 27711817
J Chem Phys. 2018 Jul 28;149(4):044116
pubmed: 30068195
J Chem Phys. 2015 Jun 7;142(21):214104
pubmed: 26049476
J Chem Phys. 2019 Sep 28;151(12):124114
pubmed: 31575192
Annu Rev Phys Chem. 2012;63:287-323
pubmed: 22242728
Acc Chem Res. 2020 Jul 21;53(7):1306-1315
pubmed: 32613827
J Chem Phys. 2020 Jun 7;152(21):214115
pubmed: 32505165
J Chem Phys. 2018 Sep 28;149(12):124107
pubmed: 30278681
Phys Chem Chem Phys. 2010 Oct 14;12(38):12024-39
pubmed: 20714478
J Chem Phys. 2008 Nov 14;129(18):184113
pubmed: 19045392
J Chem Phys. 2013 Mar 28;138(12):124311
pubmed: 23556727
J Chem Theory Comput. 2021 Jan 12;17(1):117-126
pubmed: 33263255
Philos Trans A Math Phys Eng Sci. 2019 May 20;377(2145):20170464
pubmed: 30929622
Phys Chem Chem Phys. 2016 May 21;18(19):13591-603
pubmed: 27136720
J Phys Chem B. 2016 Jul 28;120(29):7182-94
pubmed: 27380541
Biochim Biophys Acta. 2015 Jun;1853(6):1406-15
pubmed: 25486459
J Chem Phys. 2019 Jun 14;150(22):224104
pubmed: 31202254
Photosynth Res. 2009 Nov-Dec;102(2-3):241-54
pubmed: 19653117
J Chem Phys. 2013 May 28;138(20):204101
pubmed: 23742448
J Chem Theory Comput. 2019 May 14;15(5):3117-3133
pubmed: 30964297
J Phys Chem Lett. 2017 Jul 6;8(13):2951-2957
pubmed: 28609098
Science. 2017 Apr 7;356(6333):54-59
pubmed: 28386006
J Am Chem Soc. 2017 Nov 22;139(46):16576-16583
pubmed: 29083165
J Chem Phys. 2018 Feb 14;148(6):064106
pubmed: 29448773
Chem Rev. 2014 Apr 23;114(8):4175-205
pubmed: 24684576
J Chem Phys. 2020 Aug 7;153(5):054114
pubmed: 32770930
Nat Commun. 2017 Jun 22;8(1):29
pubmed: 28642477
J Chem Phys. 2015 Jun 28;142(24):244111
pubmed: 26133414
Science. 2017 Jan 20;355(6322):264-267
pubmed: 28059713
Chem Rev. 2005 Nov;105(11):4009-37
pubmed: 16277369
Sci Rep. 2016 Sep 13;6:33292
pubmed: 27620067
J Chem Phys. 2008 Apr 7;128(13):134110
pubmed: 18397056
J Chem Theory Comput. 2014 Oct 14;10(10):4583-98
pubmed: 26588152
J Phys Chem A. 2008 Dec 18;112(50):13164-71
pubmed: 18729344
Phys Rev A. 1991 May 1;43(9):4647-4659
pubmed: 9905581
J Chem Theory Comput. 2018 Aug 14;14(8):4360-4379
pubmed: 29966098
Inorg Chem. 2020 Sep 8;59(17):12518-12535
pubmed: 32830953
J Chem Theory Comput. 2014 Oct 14;10(10):4557-64
pubmed: 26588149
J Phys Chem A. 2019 Nov 14;123(45):9701-9711
pubmed: 31549830
J Phys Chem Lett. 2016 Jun 2;7(11):1991-5
pubmed: 27159130
Phys Rev A. 1996 Apr;53(4):2140-2152
pubmed: 9913120
J Chem Phys. 2016 Feb 21;144(7):074106
pubmed: 26896975
J Chem Phys. 2006 Aug 14;125(6):64109
pubmed: 16942275
J Chem Phys. 2012 Nov 7;137(17):171101
pubmed: 23145708
J Phys Chem A. 2010 Sep 23;114(37):10270-6
pubmed: 20795686
J Chem Phys. 2007 Nov 7;127(17):174110
pubmed: 17994810
J Chem Phys. 2006 Jan 21;124(3):034302
pubmed: 16438578
J Chem Phys. 2019 Oct 14;151(14):144104
pubmed: 31615239
Phys Chem Chem Phys. 2015 Sep 21;17(35):22566-70
pubmed: 26268195
Phys Rev A. 1992 Oct 1;46(7):3935-3944
pubmed: 9908589
J Chem Phys. 2016 Jul 21;145(3):034107
pubmed: 27448874
J Am Chem Soc. 2018 Oct 3;140(39):12538-12544
pubmed: 30204442
Acc Chem Res. 2018 Dec 18;51(12):3203-3211
pubmed: 30462481
Nature. 2012 Jan 25;481(7382):488-91
pubmed: 22281598
Phys Chem Chem Phys. 2015 Jun 14;17(22):14360-74
pubmed: 25690350
Sci Rep. 2016 Apr 21;6:24659
pubmed: 27098342
J Chem Theory Comput. 2015 Jul 14;11(7):3234-44
pubmed: 26575760
J Chem Theory Comput. 2007;3(2):407-433
pubmed: 19002267
J Chem Phys. 2004 Dec 1;121(21):10339-45
pubmed: 15549911
J Chem Phys. 2014 May 14;140(18):18A534
pubmed: 24832342
Science. 2004 May 14;304(5673):995-9
pubmed: 15060287
J Comput Chem. 2020 May 30;41(14):1368-1383
pubmed: 32108955
J Phys Chem Lett. 2020 Mar 19;11(6):2374-2383
pubmed: 32125872
J Chem Phys. 2020 May 14;152(18):184103
pubmed: 32414265
Chem Rev. 2012 Jan 11;112(1):543-631
pubmed: 22236047
Phys Rev Lett. 1996 Oct 28;77(18):3865-3868
pubmed: 10062328
J Chem Phys. 2016 Aug 7;145(5):054109
pubmed: 27497541
Phys Chem Chem Phys. 2009 Nov 28;11(44):10350-8
pubmed: 19890519
Chem Soc Rev. 2006 Dec;35(12):1244-55
pubmed: 17225886
J Chem Phys. 2019 Feb 21;150(7):074104
pubmed: 30795654
Phys Rev A Gen Phys. 1986 Oct;34(4):2986-2997
pubmed: 9897617
J Chem Theory Comput. 2016 Mar 8;12(3):1314-30
pubmed: 26845396
Chem Rev. 2016 Jul 13;116(13):7551-69
pubmed: 27244473
J Chem Phys. 2008 Sep 14;129(10):104103
pubmed: 19044904
J Phys Chem Lett. 2020 Feb 6;11(3):775-786
pubmed: 31917579
Phys Chem Chem Phys. 2011 Dec 14;13(46):20519-35
pubmed: 21970894
J Chem Phys. 2019 Oct 14;151(14):144107
pubmed: 31615219
J Chem Theory Comput. 2012 May 8;8(5):1616-28
pubmed: 26593655
J Phys Chem A. 2019 Mar 7;123(9):1840-1850
pubmed: 30742431

Auteurs

Thomas Fransson (T)

Interdisciplinary Center for Scientific Computing, Ruprecht-Karls University, Im Neuenheimer Feld 205, 69120 Heidelberg, Germany.
Fysikum, Stockholm University, Albanova, 10691 Stockholm, Sweden.

Iulia E Brumboiu (IE)

Department of Theoretical Chemistry and Biology, KTH Royal Institute of Technology, 10691 Stockholm, Sweden.
Department of Chemistry, Korea Advanced Institute of Science and Technology, 34141 Daejeon, Korea.

Marta L Vidal (ML)

DTU Chemistry, Technical University of Denmark, Kemitorvet Bldg 207, DK-2800 Kongens Lyngby, Denmark.

Patrick Norman (P)

Department of Theoretical Chemistry and Biology, KTH Royal Institute of Technology, 10691 Stockholm, Sweden.

Sonia Coriani (S)

DTU Chemistry, Technical University of Denmark, Kemitorvet Bldg 207, DK-2800 Kongens Lyngby, Denmark.
Department of Chemistry, NTNU-Norwegian University of Science and Technology, N-7991 Trondheim, Norway.

Andreas Dreuw (A)

Interdisciplinary Center for Scientific Computing, Ruprecht-Karls University, Im Neuenheimer Feld 205, 69120 Heidelberg, Germany.

Classifications MeSH