Character-based identification key for commercially important fishes of Pulicat lake: tool for conservation and management.

BLOG2.0 Pulicat lake biodiversity diagnostic nucleotides species specific-probes

Journal

Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis
ISSN: 2470-1408
Titre abrégé: Mitochondrial DNA A DNA Mapp Seq Anal
Pays: England
ID NLM: 101679980

Informations de publication

Date de publication:
05 2021
Historique:
pubmed: 11 2 2021
medline: 3 3 2022
entrez: 10 2 2021
Statut: ppublish

Résumé

Fishes are an important group of vertebrates in the animal world and make a significant contribution to global biodiversity. Fish is used as a source of food and contains many essential vitamins and fatty acids. The study of fish and their stability is important because, from year to year, fish stocks are often very important. For the conservation and management of these dwindling resources, correct identification of species is a prerequisite. Character-based methods of identification are of considerable use in this context, which classify specimens into species using classification rules that compactly describe species in terms of key diagnostic nucleotides in the gene sequences chosen. In this study, a total of 56 species of fishes distributed in Pulicat lake waters is taken as the target group. Mitochondrial CO1 sequences of each species were downloaded and modified. The species-specific diagnostic nucleotides for the selected group of species were identified using the BLOG version 2.0 software. Species-specific probes with a length range of 18-37 bp were designed on the basis of identified diagnostic nucleotide sites. The method is an effective tool for quickly and easily obtaining a significant amount of reliable information and could be used for forensic applications and conservation of fishes in Pulicat Lake.

Identifiants

pubmed: 33565345
doi: 10.1080/24701394.2021.1883009
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

120-125

Auteurs

Rathipriya A (R)

Institute of Fisheries Postgraduate Studies, TNJFU OMR Campus, Chennai, India.

Kathirvelpandian A (K)

Institute of Fisheries Postgraduate Studies, TNJFU OMR Campus, Chennai, India.

Shanmugam S A (S)

Institute of Fisheries Postgraduate Studies, TNJFU OMR Campus, Chennai, India.

Suresh E (S)

Institute of Fisheries Postgraduate Studies, TNJFU OMR Campus, Chennai, India.

Felix N (F)

Directorate of Incubation and Vocational Training in Aquaculture, ECR-Muttukadu, Chennai-603 112, India.

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Classifications MeSH