Character-based identification key for commercially important fishes of Pulicat lake: tool for conservation and management.
BLOG2.0
Pulicat lake
biodiversity
diagnostic nucleotides
species specific-probes
Journal
Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis
ISSN: 2470-1408
Titre abrégé: Mitochondrial DNA A DNA Mapp Seq Anal
Pays: England
ID NLM: 101679980
Informations de publication
Date de publication:
05 2021
05 2021
Historique:
pubmed:
11
2
2021
medline:
3
3
2022
entrez:
10
2
2021
Statut:
ppublish
Résumé
Fishes are an important group of vertebrates in the animal world and make a significant contribution to global biodiversity. Fish is used as a source of food and contains many essential vitamins and fatty acids. The study of fish and their stability is important because, from year to year, fish stocks are often very important. For the conservation and management of these dwindling resources, correct identification of species is a prerequisite. Character-based methods of identification are of considerable use in this context, which classify specimens into species using classification rules that compactly describe species in terms of key diagnostic nucleotides in the gene sequences chosen. In this study, a total of 56 species of fishes distributed in Pulicat lake waters is taken as the target group. Mitochondrial CO1 sequences of each species were downloaded and modified. The species-specific diagnostic nucleotides for the selected group of species were identified using the BLOG version 2.0 software. Species-specific probes with a length range of 18-37 bp were designed on the basis of identified diagnostic nucleotide sites. The method is an effective tool for quickly and easily obtaining a significant amount of reliable information and could be used for forensic applications and conservation of fishes in Pulicat Lake.
Identifiants
pubmed: 33565345
doi: 10.1080/24701394.2021.1883009
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM