Uncertainty estimation for molecular dynamics and sampling.


Journal

The Journal of chemical physics
ISSN: 1089-7690
Titre abrégé: J Chem Phys
Pays: United States
ID NLM: 0375360

Informations de publication

Date de publication:
21 Feb 2021
Historique:
entrez: 20 2 2021
pubmed: 21 2 2021
medline: 21 2 2021
Statut: ppublish

Résumé

Machine-learning models have emerged as a very effective strategy to sidestep time-consuming electronic-structure calculations, enabling accurate simulations of greater size, time scale, and complexity. Given the interpolative nature of these models, the reliability of predictions depends on the position in phase space, and it is crucial to obtain an estimate of the error that derives from the finite number of reference structures included during model training. When using a machine-learning potential to sample a finite-temperature ensemble, the uncertainty on individual configurations translates into an error on thermodynamic averages and leads to a loss of accuracy when the simulation enters a previously unexplored region. Here, we discuss how uncertainty quantification can be used, together with a baseline energy model, or a more robust but less accurate interatomic potential, to obtain more resilient simulations and to support active-learning strategies. Furthermore, we introduce an on-the-fly reweighing scheme that makes it possible to estimate the uncertainty in thermodynamic averages extracted from long trajectories. We present examples covering different types of structural and thermodynamic properties and systems as diverse as water and liquid gallium.

Identifiants

pubmed: 33607885
doi: 10.1063/5.0036522
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

074102

Auteurs

Giulio Imbalzano (G)

Laboratory of Computational Science and Modeling, IMX, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland.

Yongbin Zhuang (Y)

State Key Laboratory of Physical Chemistry of Solid Surfaces, Collaborative Innovation Center of Chemistry for Energy Materials, Xiamen University, Xiamen 361005, China.

Venkat Kapil (V)

Laboratory of Computational Science and Modeling, IMX, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland.

Kevin Rossi (K)

Laboratory of Computational Science and Modeling, IMX, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland.

Edgar A Engel (EA)

Laboratory of Computational Science and Modeling, IMX, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland.

Federico Grasselli (F)

Laboratory of Computational Science and Modeling, IMX, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland.

Michele Ceriotti (M)

Laboratory of Computational Science and Modeling, IMX, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland.

Classifications MeSH