Dynamic progression of the calf's microbiome and its influence on host health.

Calve Feeding Gastrointestinal tract Host health Immune system Microbiome

Journal

Computational and structural biotechnology journal
ISSN: 2001-0370
Titre abrégé: Comput Struct Biotechnol J
Pays: Netherlands
ID NLM: 101585369

Informations de publication

Date de publication:
2021
Historique:
received: 28 09 2020
revised: 20 01 2021
accepted: 20 01 2021
entrez: 22 2 2021
pubmed: 23 2 2021
medline: 23 2 2021
Statut: epublish

Résumé

The first year of a calf's life is a critical phase as its digestive system and immunity are underdeveloped. A high level of stress caused by separation from mothers, transportation, antibiotic treatments, dietary shifts, and weaning can have long-lasting health effects, which can reduce future production parameters, such as milk yield and reproduction, or even increase the mortality of calves. The early succession of microbes throughout the gastrointestinal tract of neonatal calves follows a sequential pattern of colonisation and is greatly influenced by their physiological state, age, diet, and environmental factors; this leads to the establishment of region- and site-specific microbial communities. This review summarises the current information on the various potential factors that may affect the early life microbial colonisation pattern in the gastrointestinal tract of calves. The possible role of host-microbe interactions in the development and maturation of host gut, immune system, and health are described. Additionally, the possibility of improving the health of calves through gut microbiome modulation and using antimicrobial alternatives is discussed. Finally, the trends, challenges, and limitations of the current research are summarised and prospective directions for future studies are highlighted.

Identifiants

pubmed: 33613865
doi: 10.1016/j.csbj.2021.01.035
pii: S2001-0370(21)00039-8
pmc: PMC7868804
doi:

Types de publication

Journal Article Review

Langues

eng

Pagination

989-1001

Informations de copyright

© 2021 The Author(s).

Déclaration de conflit d'intérêts

The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Références

Appl Environ Microbiol. 2006 Jun;72(6):3940-8
pubmed: 16751500
Microbiome. 2019 Jun 13;7(1):92
pubmed: 31196178
PLoS One. 2013 Apr 30;8(4):e63157
pubmed: 23646192
BMC Microbiol. 2017 Aug 30;17(1):190
pubmed: 28854878
J Nutr. 2011 May;141(5):769-76
pubmed: 21430248
Microbiologyopen. 2018 Feb;7(1):
pubmed: 29280327
J Dairy Sci. 2013 May;96(5):3189-200
pubmed: 23498024
Front Microbiol. 2020 Jun 24;11:1403
pubmed: 32670244
J Dairy Sci. 2016 Feb;99(2):885-902
pubmed: 26709160
J Physiol Pharmacol. 2009 Oct;60 Suppl 3:37-46
pubmed: 19996480
PLoS One. 2019 Dec 11;14(12):e0219635
pubmed: 31825967
Microb Ecol. 2019 Feb;77(2):523-536
pubmed: 30033500
Inflamm Bowel Dis. 2009 Aug;15(8):1183-9
pubmed: 19235886
Nat Med. 2000 Aug;6(8):929-32
pubmed: 10932233
Curr Microbiol. 2000 Jul;41(1):45-9
pubmed: 10919398
J Dairy Sci. 2020 Nov;103(11):10547-10559
pubmed: 32861496
FEMS Microbiol Ecol. 2020 Feb 1;96(2):
pubmed: 31917419
Vet Rec. 2014 Oct 4;175(13):325
pubmed: 24899065
J Dairy Sci. 2017 Oct;100(10):7967-7979
pubmed: 28755935
J Dairy Sci. 2013 May;96(5):3247-56
pubmed: 23497992
Sci Rep. 2015 Oct 09;5:14567
pubmed: 26449758
PLoS Genet. 2016 Feb 18;12(2):e1005846
pubmed: 26891056
J Dairy Sci. 2020 Apr;103(4):3204-3218
pubmed: 32113756
J Dairy Sci. 2019 Jan;102(1):377-387
pubmed: 30415859
J Anim Sci. 1999 Feb;77(2):300-10
pubmed: 10100657
Anim Health Res Rev. 2012 Jun;13(1):129-41
pubmed: 22853940
J Dairy Sci. 2015 Sep;98(9):6315-26
pubmed: 26142851
Anim Sci J. 2013 Feb;84(2):101-5
pubmed: 23384350
PLoS One. 2015 Dec 28;10(12):e0145485
pubmed: 26710101
PLoS One. 2010 Oct 22;5(10):e13607
pubmed: 21042588
Sci Rep. 2017 Jan 18;7:40864
pubmed: 28098248
Nat Rev Microbiol. 2013 Apr;11(4):227-38
pubmed: 23435359
FEMS Microbiol Ecol. 2019 Jan 1;95(1):
pubmed: 30307547
Environ Microbiol. 2012 Jan;14(1):129-39
pubmed: 21906219
Clin Res Hepatol Gastroenterol. 2015 Feb;39(1):9-19
pubmed: 25481240
Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11971-5
pubmed: 20566857
J Dairy Sci. 2018 Mar;101(3):2285-2292
pubmed: 29274973
J Anim Physiol Anim Nutr (Berl). 2013 Dec;97(6):1091-103
pubmed: 23205592
J Dairy Sci. 2012 Jul;95(7):3997-4005
pubmed: 22720954
J Dairy Sci. 2018 Apr;101(4):3099-3109
pubmed: 29397179
J Food Prot. 2008 Jan;71(1):27-34
pubmed: 18236659
Microb Ecol. 2010 Nov;60(4):721-9
pubmed: 20585943
J Clin Microbiol. 1998 Mar;36(3):641-7
pubmed: 9508288
J Anim Sci. 1987 Apr;64(4):1215-26
pubmed: 3571026
Cell Immunol. 2011;271(2):428-37
pubmed: 21917242
Acta Vet Scand. 2013 Jul 09;55:49
pubmed: 23837498
J Sci Food Agric. 2021 Jan 15;101(1):82-90
pubmed: 32608134
Front Microbiol. 2015 Apr 10;6:296
pubmed: 25914693
FEMS Microbiol Ecol. 2018 Mar 1;94(3):
pubmed: 29267960
ISME J. 2013 Jun;7(6):1069-79
pubmed: 23426008
J Dairy Sci. 2015 Nov;98(11):8044-53
pubmed: 26342981
Sci Rep. 2018 Jul 11;8(1):10437
pubmed: 29993024
Vet Immunol Immunopathol. 2012 Mar 15;146(1):18-26
pubmed: 22321738
Front Microbiol. 2020 Apr 03;11:485
pubmed: 32308649
Front Microbiol. 2015 Oct 14;6:1133
pubmed: 26528276
Front Microbiol. 2016 Oct 21;7:1575
pubmed: 27818645
FEMS Microbiol Ecol. 2012 Feb;79(2):337-47
pubmed: 22092450
J Dairy Sci. 2012 Aug;95(8):4519-25
pubmed: 22818466
J Anim Sci. 2013 Oct;91(10):4984-90
pubmed: 23942707
J Dairy Sci. 2019 Mar;102(3):2298-2307
pubmed: 30692007
J Dairy Sci. 1995 Dec;78(12):2838-46
pubmed: 8675766
Anim Sci J. 2016 Mar;87(3):378-88
pubmed: 26249227
Vet Rec. 2015 Dec 12;177(23):598
pubmed: 26645721
J Dairy Sci. 2020 Sep;103(9):8629-8642
pubmed: 32622610
J Dairy Sci. 2013 Aug;96(8):5226-36
pubmed: 23706491
PLoS One. 2020 Apr 13;15(4):e0231533
pubmed: 32282837
Sci Rep. 2018 Feb 16;8(1):3197
pubmed: 29453364
Clin Immunol. 2011 Mar;138(3):299-310
pubmed: 21247809
J Anim Sci. 2015 Feb;93(2):492-501
pubmed: 26020740
Integr Comp Biol. 2002 Apr;42(2):319-26
pubmed: 21708724
Front Vet Sci. 2015 Sep 23;2:36
pubmed: 26664965
Microorganisms. 2018 Nov 27;6(4):
pubmed: 30486334
Dev Comp Immunol. 2004 Apr;28(4):357-69
pubmed: 14698221
ISME J. 2020 Jan;14(1):302-317
pubmed: 31624342
Animals (Basel). 2019 Jul 15;9(7):
pubmed: 31311119
PLoS Biol. 2012;10(9):e1001397
pubmed: 23049482
Science. 2001 May 11;292(5519):1119-22
pubmed: 11352069
J Dairy Sci. 2011 Jul;94(7):3547-53
pubmed: 21700042
Br Vet J. 1990 Jan-Feb;146(1):80-7
pubmed: 2306606
PLoS One. 2019 Aug 1;14(8):e0220554
pubmed: 31369600
Front Vet Sci. 2019 Oct 24;6:371
pubmed: 31709269
J Dairy Sci. 2010 Jan;93(1):148-52
pubmed: 20059913
J Dairy Sci. 2017 Apr;100(4):2682-2694
pubmed: 28215892
J Dairy Sci. 2020 Jul;103(7):6100-6113
pubmed: 32307167
Microbes Environ. 2015;30(2):126-32
pubmed: 26004794
Sci Rep. 2018 Jan 11;8(1):554
pubmed: 29323259
PLoS Genet. 2018 Oct 12;14(10):e1007580
pubmed: 30312316
ISME J. 2020 Sep;14(9):2223-2235
pubmed: 32444812
Annu Rev Pathol. 2010;5:119-44
pubmed: 20078218
Int J Syst Evol Microbiol. 2008 Dec;58(Pt 12):2682-6
pubmed: 19060040
Sci Rep. 2016 Aug 31;6:32479
pubmed: 27576848
PLoS One. 2016 Jan 25;11(1):e0147525
pubmed: 26808865
Science. 2012 Jun 8;336(6086):1268-73
pubmed: 22674334
Clin Dev Immunol. 2013;2013:270301
pubmed: 23737810
J Vet Intern Med. 2004 Jan-Feb;18(1):8-17
pubmed: 14765726
J Am Vet Med Assoc. 2005 May 1;226(9):1547-54
pubmed: 15882008
Anim Sci J. 2019 Dec;90(12):1537-1543
pubmed: 31593366
Cell. 2004 Jul 23;118(2):229-41
pubmed: 15260992
PLoS One. 2012;7(3):e33306
pubmed: 22432013
J Dairy Sci. 2009 Feb;92(2):645-56
pubmed: 19164677
PLoS One. 2012;7(8):e44595
pubmed: 22957008
Sci Rep. 2015 Nov 03;5:16116
pubmed: 26527325
Acta Paediatr Suppl. 2003 Sep;91(441):48-55
pubmed: 14599042
J Dairy Sci. 2020 Sep;103(9):8615-8628
pubmed: 32684462
J Dairy Sci. 2012 May;95(5):2585-94
pubmed: 22541487
Nature. 2011 Jan 27;469(7331):543-7
pubmed: 21270894
Oncotarget. 2018 Apr 20;9(30):21052-21069
pubmed: 29765519
FEMS Microbiol Ecol. 2017 Sep 1;93(9):
pubmed: 28922800
Vet Clin North Am Food Anim Pract. 2019 Nov;35(3):431-451
pubmed: 31590896
J Vet Intern Med. 2017 Jan;31(1):176-185
pubmed: 27873352
J Dairy Sci. 2020 May;103(5):4262-4274
pubmed: 32171510
Prev Vet Med. 2005 Jun 10;69(1-2):25-38
pubmed: 15899294
Vet Rec. 2012 Sep 22;171(12):296
pubmed: 22903925
Appl Environ Microbiol. 2018 Apr 16;84(9):
pubmed: 29475865
Front Microbiol. 2016 May 03;7:582
pubmed: 27199916
J Dairy Sci. 2003 Dec;86(12):3963-6
pubmed: 14740833
PLoS One. 2016 May 27;11(5):e0156334
pubmed: 27232601
Vet Microbiol. 2012 Dec 28;161(1-2):179-85
pubmed: 22858232
Asian-Australas J Anim Sci. 2017 Nov;30(11):1557-1562
pubmed: 28423879
Front Vet Sci. 2019 Jun 06;6:159
pubmed: 31245388
Vet Clin North Am Food Anim Pract. 2008 Mar;24(1):19-39
pubmed: 18299030
Sci Rep. 2017 Mar 15;7(1):198
pubmed: 28298634
Nat Rev Immunol. 2010 Feb;10(2):131-44
pubmed: 20098461
Int J Syst Bacteriol. 1994 Apr;44(2):246-55
pubmed: 7910475
J Clin Invest. 2016 Oct 3;126(10):3680-3688
pubmed: 27500494
J Dairy Sci. 2017 Jul;100(7):5996-6005
pubmed: 28501408
J Dairy Sci. 2014 Mar;97(3):1513-9
pubmed: 24440252
Nat Rev Microbiol. 2008 Feb;6(2):121-31
pubmed: 18180751
Genome Biol. 2019 Aug 23;20(1):172
pubmed: 31443695
Front Microbiol. 2020 Jun 04;11:994
pubmed: 32582049
Front Microbiol. 2012 Apr 10;3:139
pubmed: 22514550
Eur J Immunol. 1984 Jan;14(1):1-6
pubmed: 6420166
Appl Environ Microbiol. 2014 Mar;80(6):2021-8
pubmed: 24441166
Sci Rep. 2018 Jan 26;8(1):1693
pubmed: 29374218
J Appl Microbiol. 2014 Feb;116(2):245-57
pubmed: 24279326
J Dairy Sci. 1998 Jul;81(7):1946-55
pubmed: 9710764
J Anim Sci. 1999 Feb;77(2):323-9
pubmed: 10100659
PLoS One. 2012;7(3):e34043
pubmed: 22479515
Lett Appl Microbiol. 2010 Nov;51(5):570-7
pubmed: 20849397
J Dairy Sci. 2010 Dec;93(12):5902-12
pubmed: 21094763
Nat Rev Microbiol. 2005 Sep;3(9):711-21
pubmed: 16138099
PLoS One. 2015 Jul 17;10(7):e0133048
pubmed: 26186002
PLoS One. 2014 Mar 28;9(3):e92592
pubmed: 24682221
J Dairy Sci. 2009 Sep;92(9):4707-14
pubmed: 19700735
EFSA J. 2017 Jan 27;15(1):e04665
pubmed: 32704309
Appl Environ Microbiol. 2019 Jan 9;85(2):
pubmed: 30367001
J Dairy Sci. 2012 Mar;95(3):1500-12
pubmed: 22365231
Front Microbiol. 2017 Aug 15;8:1553
pubmed: 28861065
Appl Environ Microbiol. 2004 Feb;70(2):752-7
pubmed: 14766551
Front Microbiol. 2014 Nov 17;5:622
pubmed: 25452753
J Dairy Sci. 2012 Jul;95(7):4029-40
pubmed: 22720957
J Appl Bacteriol. 1985 Feb;58(2):131-8
pubmed: 3884563
Semin Immunol. 2013 Nov 30;25(5):364-9
pubmed: 24169518

Auteurs

Nida Amin (N)

Institute of Animal Science, University of Hohenheim, Stuttgart, Germany.

Jana Seifert (J)

Institute of Animal Science, University of Hohenheim, Stuttgart, Germany.

Classifications MeSH