Chromosome-Level Genome Assembly of the Common Chaffinch (Aves: Fringilla coelebs): A Valuable Resource for Evolutionary Biology.

Animals Chromosomes Evolution, Molecular Genome Genomics Passeriformes / genetics RNA, Transfer / genetics RNA, Untranslated / genetics Repetitive Sequences, Nucleic Acid
Fringilla coelebs common chaffinch reference genome whole genome assembly

Journal

Genome biology and evolution
ISSN: 1759-6653
Titre abrégé: Genome Biol Evol
Pays: England
ID NLM: 101509707

Informations de publication

Date de publication:
05 04 2021
Historique:
accepted: 16 02 2021
pubmed: 23 2 2021
medline: 27 1 2022
entrez: 22 2 2021
Statut: ppublish

Résumé

The common chaffinch, Fringilla coelebs, is one of the most common, widespread, and well-studied passerines in Europe, with a broad distribution encompassing Western Europe and parts of Asia, North Africa, and the Macaronesian archipelagos. We present a high-quality genome assembly of the common chaffinch generated using Illumina shotgun sequencing in combination with Chicago and Hi-C libraries. The final genome is a 994.87-Mb chromosome-level assembly, with 98% of the sequence data located in chromosome scaffolds and a N50 statistic of 69.73 Mb. Our genome assembly shows high completeness, with a complete BUSCO score of 93.9% using the avian data set. Around 7.8% of the genome contains interspersed repetitive elements. The structural annotation yielded 17,703 genes, 86.5% of which have a functional annotation, including 7,827 complete universal single-copy orthologs out of 8,338 genes represented in the BUSCO avian data set. This new annotated genome assembly will be a valuable resource as a reference for comparative and population genomic analyses of passerine, avian, and vertebrate evolution.

Identifiants

DOI: 10.1093/gbe/evab034 PMID: 33616654 PMC: PMC8046334
pubmed: 33616654
pii: 6146356
doi: 10.1093/gbe/evab034
pmc: PMC8046334
pii:
doi:

Substances chimiques

RNA, Untranslated 0
RNA, Transfer 9014-25-9

Banques de données

figshare
['10.6084/m9.figshare.13296122.v3']

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

© The Author(s) 2021. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

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Auteurs

María Recuerda (M)

National Museum of Natural Sciences, Spanish National Research Council (CSIC), Madrid, Spain.

Joel Vizueta (J)

National Museum of Natural Sciences, Spanish National Research Council (CSIC), Madrid, Spain.
Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain.

Cristian Cuevas-Caballé (C)

Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain.

Guillermo Blanco (G)

National Museum of Natural Sciences, Spanish National Research Council (CSIC), Madrid, Spain.

Julio Rozas (J)

Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain.

Borja Milá (B)

National Museum of Natural Sciences, Spanish National Research Council (CSIC), Madrid, Spain.

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Classifications MeSH

questionsmedicales.fr › Eucaryotes › Animaux › Chromosome-Level Genome Assembly of the Common...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Chromosomes › Chromosome-Level Genome Assembly of the Common...
questionsmedicales.fr › Phénomènes biologiques › Évolution biologique › Évolution moléculaire › Chromosome-Level Genome Assembly of the Common...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Chromosome-Level Genome Assembly of the Common...
questionsmedicales.fr › Disciplines des sciences naturelles › Disciplines des sciences biologiques › Biologie › Génétique › Génomique › Chromosome-Level Genome Assembly of the Common...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Oiseaux › Passeriformes › Chromosome-Level Genome Assembly of the Common...
questionsmedicales.fr › Acides nucléiques, nucléotides et nucléosides › Acides nucléiques › ARN › ARN de transfert › Chromosome-Level Genome Assembly of the Common...
questionsmedicales.fr › Acides nucléiques, nucléotides et nucléosides › Acides nucléiques › ARN › ARN non traduit › Chromosome-Level Genome Assembly of the Common...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Séquences répétées d'acides nucléiques › Chromosome-Level Genome Assembly of the Common...