RING domains act as both substrate and enzyme in a catalytic arrangement to drive self-anchored ubiquitination.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
22 02 2021
Historique:
received: 30 09 2020
accepted: 26 01 2021
entrez: 23 2 2021
pubmed: 24 2 2021
medline: 3 3 2021
Statut: epublish

Résumé

Attachment of ubiquitin (Ub) to proteins is one of the most abundant and versatile of all posttranslational modifications and affects outcomes in essentially all physiological processes. RING E3 ligases target E2 Ub-conjugating enzymes to the substrate, resulting in its ubiquitination. However, the mechanism by which a ubiquitin chain is formed on the substrate remains elusive. Here we demonstrate how substrate binding can induce a specific RING topology that enables self-ubiquitination. By analyzing a catalytically trapped structure showing the initiation of TRIM21 RING-anchored ubiquitin chain elongation, and in combination with a kinetic study, we illuminate the chemical mechanism of ubiquitin conjugation. Moreover, biochemical and cellular experiments show that the topology found in the structure can be induced by substrate binding. Our results provide insights into ubiquitin chain formation on a structural, biochemical and cellular level with broad implications for targeted protein degradation.

Identifiants

pubmed: 33619271
doi: 10.1038/s41467-021-21443-6
pii: 10.1038/s41467-021-21443-6
pmc: PMC7900206
doi:

Substances chimiques

Ribonucleoproteins 0
SS-A antigen 0
Ubiquitin 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1220

Subventions

Organisme : Medical Research Council
ID : MC_U105178934
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 200594/Z/16/Z
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_U105181010
Pays : United Kingdom
Organisme : Medical Research Council
ID : U105178934
Pays : United Kingdom
Organisme : Medical Research Council
ID : U105181010
Pays : United Kingdom
Organisme : Wellcome Trust
Pays : United Kingdom

Références

Proc Natl Acad Sci U S A. 2011 Jan 11;108(2):534-9
pubmed: 21187419
Nat Struct Mol Biol. 2012 Sep;19(9):876-83
pubmed: 22902369
Proc Natl Acad Sci U S A. 2007 Apr 10;104(15):6200-5
pubmed: 17400754
J Virol. 2017 Nov 30;91(24):
pubmed: 28978703
Nat Struct Mol Biol. 2013 May;20(5):555-65
pubmed: 23563141
Nat Commun. 2015 Apr 21;6:6867
pubmed: 25897946
J Virol. 2012 Aug;86(16):8482-91
pubmed: 22647693
Nat Struct Mol Biol. 2006 Oct;13(10):915-20
pubmed: 16980971
Neuron. 1992 Nov;9(5):861-71
pubmed: 1419000
Nat Struct Mol Biol. 2007 Oct;14(10):941-8
pubmed: 17873885
Cell. 1999 Mar 5;96(5):645-53
pubmed: 10089880
Nat Immunol. 2013 Apr;14(4):327-36
pubmed: 23455675
Nature. 2004 Jul 29;430(6999):569-73
pubmed: 15243629
J Mol Biol. 1987 Apr 5;194(3):531-44
pubmed: 3041007
Methods Enzymol. 2005;399:21-36
pubmed: 16338346
Annu Rev Biochem. 2012;81:203-29
pubmed: 22524316
Cell. 2017 Dec 14;171(7):1692-1706.e18
pubmed: 29153837
EMBO J. 2016 Jun 1;35(11):1204-18
pubmed: 27154206
Cell. 2001 Jun 15;105(6):711-20
pubmed: 11440714
Cell. 2019 May 16;177(5):1187-1200.e16
pubmed: 31006531
Nat Commun. 2019 Jan 10;10(1):131
pubmed: 30631068
Mol Cell. 2016 Oct 20;64(2):251-266
pubmed: 27746020
Nat Rev Drug Discov. 2019 Dec;18(12):949-963
pubmed: 31666732
Nat Struct Biol. 2001 Aug;8(8):669-73
pubmed: 11473255
Cell. 2014 Jun 19;157(7):1671-84
pubmed: 24949976
Proc Natl Acad Sci U S A. 2015 Aug 11;112(32):10014-9
pubmed: 26150489
Elife. 2018 Apr 18;7:
pubmed: 29667579
Nat Cell Biol. 2020 Jun;22(6):663-673
pubmed: 32393887
Nat Protoc. 2018 Oct;13(10):2149-2175
pubmed: 30250286
Nature. 2016 Aug 18;536(7616):304-8
pubmed: 27509863
J Biol Chem. 2003 Apr 11;278(15):13151-8
pubmed: 12569095
Elife. 2016 Jun 02;5:
pubmed: 27253068
EMBO Rep. 2009 May;10(5):466-73
pubmed: 19373254
Cell Rep. 2015 Aug 4;12(5):788-97
pubmed: 26212332
Proc Natl Acad Sci U S A. 2001 Jul 17;98(15):8554-9
pubmed: 11438690
Proc Natl Acad Sci U S A. 1998 Jun 9;95(12):6803-8
pubmed: 9618493
Nat Chem Biol. 2015 Aug;11(8):611-7
pubmed: 26075522
Science. 2008 Jun 13;320(5882):1471-5
pubmed: 18556554
ACS Chem Biol. 2015 Aug 21;10(8):1770-7
pubmed: 26035625
Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):352-67
pubmed: 22505256
Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2126-32
pubmed: 15572765
Cell Rep. 2016 Aug 2;16(5):1315-1325
pubmed: 27425606
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21
pubmed: 20124702
PLoS One. 2012;7(11):e50030
pubmed: 23185523
Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19985-90
pubmed: 21045130
Nat Commun. 2019 Oct 3;10(1):4502
pubmed: 31582740
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):125-32
pubmed: 20124692
Nature. 2004 Feb 26;427(6977):848-53
pubmed: 14985764
EMBO J. 2015 Aug 4;34(15):2078-95
pubmed: 26101372
Mol Cell. 2020 Feb 6;77(3):446-460
pubmed: 32004468
Proc Natl Acad Sci U S A. 2018 Feb 13;115(7):E1401-E1408
pubmed: 29378950
Acta Crystallogr F Struct Biol Commun. 2015 Jul;71(Pt 7):831-7
pubmed: 26144227
Nat Struct Mol Biol. 2015 Aug;22(8):597-602
pubmed: 26148049
Nature. 2020 Feb;578(7795):461-466
pubmed: 32051583
Mol Cell. 2012 Sep 28;47(6):933-42
pubmed: 22885007
Nature. 2011 Apr 21;472(7343):361-5
pubmed: 21512573
Annu Rev Biophys. 2013;42:443-68
pubmed: 23495970
Nat Med. 2014 Nov;20(11):1242-53
pubmed: 25375928
Nature. 2012 Sep 6;489(7414):115-20
pubmed: 22842904
Biochemistry. 2019 Jul 23;58(29):3144-3154
pubmed: 31260268
Cell Host Microbe. 2018 Dec 12;24(6):761-775.e6
pubmed: 30503508
Elife. 2016 Jun 02;5:
pubmed: 27253059
Nat Struct Mol Biol. 2006 Jun;13(6):491-9
pubmed: 16732283
Science. 2015 Jun 19;348(6241):1376-81
pubmed: 25999370
Science. 2010 Mar 12;327(5971):1345-50
pubmed: 20223979

Auteurs

Leo Kiss (L)

MRC Laboratory of Molecular Biology, Cambridge, UK. lkiss@mrc-lmb.cam.ac.uk.

Dean Clift (D)

MRC Laboratory of Molecular Biology, Cambridge, UK.

Nadine Renner (N)

MRC Laboratory of Molecular Biology, Cambridge, UK.

David Neuhaus (D)

MRC Laboratory of Molecular Biology, Cambridge, UK.

Leo C James (LC)

MRC Laboratory of Molecular Biology, Cambridge, UK. lcj@mrc-lmb.cam.ac.uk.

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Classifications MeSH