Flexibilities of wavelets as a computational basis set for large-scale electronic structure calculations.


Journal

The Journal of chemical physics
ISSN: 1089-7690
Titre abrégé: J Chem Phys
Pays: United States
ID NLM: 0375360

Informations de publication

Date de publication:
21 May 2020
Historique:
entrez: 9 3 2021
pubmed: 10 3 2021
medline: 10 3 2021
Statut: ppublish

Résumé

The BigDFT project was started in 2005 with the aim of testing the advantages of using a Daubechies wavelet basis set for Kohn-Sham (KS) density functional theory (DFT) with pseudopotentials. This project led to the creation of the BigDFT code, which employs a computational approach with optimal features of flexibility, performance, and precision of the results. In particular, the employed formalism has enabled the implementation of an algorithm able to tackle DFT calculations of large systems, up to many thousands of atoms, with a computational effort that scales linearly with the number of atoms. In this work, we recall some of the features that have been made possible by the peculiar properties of Daubechies wavelets. In particular, we focus our attention on the usage of DFT for large-scale systems. We show how the localized description of the KS problem, emerging from the features of the basis set, is helpful in providing a simplified description of large-scale electronic structure calculations. We provide some examples on how such a simplified description can be employed, and we consider, among the case-studies, the SARS-CoV-2 main protease.

Identifiants

pubmed: 33687268
doi: 10.1063/5.0004792
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

194110

Auteurs

Laura E Ratcliff (LE)

Department of Materials, Imperial College London, London SW7 2AZ, United Kingdom.

William Dawson (W)

RIKEN Center for Computational Science, Kobe, Japan.

Giuseppe Fisicaro (G)

Consiglio Nazionale delle Ricerche, Istituto per la Microelettronica e Microsistemi (CNR-IMM), Z.I. VIII Strada 5, I-95121 Catania, Italy.

Damien Caliste (D)

Univ. Grenoble Alpes, CEA, IRIG-MEM-L_Sim, 38000 Grenoble, France.

Stephan Mohr (S)

Barcelona Supercomputing Center (BSC), Barcelona, Spain.

Augustin Degomme (A)

Univ. Grenoble Alpes, CEA, IRIG-MEM-L_Sim, 38000 Grenoble, France.

Brice Videau (B)

Univ. Grenoble Alpes, CEA, IRIG-MEM-L_Sim, 38000 Grenoble, France.

Viviana Cristiglio (V)

Institut Laue Langevin, 38042 Grenoble, France.

Martina Stella (M)

Department of Materials, Imperial College London, London SW7 2AZ, United Kingdom.

Marco D'Alessandro (M)

Istituto di Struttura della Materia-CNR (ISM-CNR), Via del Fosso del Cavaliere 100, 00133 Roma, Italy.

Stefan Goedecker (S)

Department of Physics, University of Basel, Basel, Switzerland.

Takahito Nakajima (T)

RIKEN Center for Computational Science, Kobe, Japan.

Thierry Deutsch (T)

Univ. Grenoble Alpes, CEA, IRIG-MEM-L_Sim, 38000 Grenoble, France.

Luigi Genovese (L)

Univ. Grenoble Alpes, CEA, IRIG-MEM-L_Sim, 38000 Grenoble, France.

Classifications MeSH