Innate immune signatures to a partially-efficacious HIV vaccine predict correlates of HIV-1 infection risk.
AIDS Vaccines
/ immunology
Antibodies, Neutralizing
/ immunology
Antibody-Dependent Cell Cytotoxicity
/ immunology
CD4-Positive T-Lymphocytes
/ immunology
HIV Antibodies
/ immunology
HIV Antigens
/ immunology
HIV Infections
/ immunology
HIV-1
/ immunology
Humans
Immunity, Innate
/ immunology
Leukocytes, Mononuclear
/ immunology
Risk
Journal
PLoS pathogens
ISSN: 1553-7374
Titre abrégé: PLoS Pathog
Pays: United States
ID NLM: 101238921
Informations de publication
Date de publication:
03 2021
03 2021
Historique:
received:
17
09
2020
accepted:
05
02
2021
entrez:
15
3
2021
pubmed:
16
3
2021
medline:
23
7
2021
Statut:
epublish
Résumé
The pox-protein regimen tested in the RV144 trial is the only vaccine strategy demonstrated to prevent HIV-1 infection. Subsequent analyses identified antibody and cellular immune responses as correlates of risk (CoRs) for HIV infection. Early predictors of these CoRs could provide insight into vaccine-induced protection and guide efforts to enhance vaccine efficacy. Using specimens from a phase 1b trial of the RV144 regimen in HIV-1-uninfected South Africans (HVTN 097), we profiled innate responses to the first ALVAC-HIV immunization. PBMC transcriptional responses peaked 1 day post-vaccination. Type I and II interferon signaling pathways were activated, as were innate pathways critical for adaptive immune priming. We then identified two innate immune transcriptional signatures strongly associated with adaptive immune CoR after completion of the 4-dose regimen. Day 1 signatures were positively associated with antibody-dependent cellular cytotoxicity and phagocytosis activity at Month 6.5. Conversely, a signature present on Days 3 and 7 was inversely associated with Env-specific CD4+ T cell responses at Months 6.5 and 12; rapid resolution of this signature was associated with higher Env-specific CD4+ T-cell responses. These are the first-reported early immune biomarkers of vaccine-induced responses associated with HIV-1 acquisition risk in humans and suggest hypotheses to improve HIV-1 vaccine regimens.
Identifiants
pubmed: 33720973
doi: 10.1371/journal.ppat.1009363
pii: PPATHOGENS-D-20-02071
pmc: PMC7959397
doi:
Substances chimiques
AIDS Vaccines
0
Antibodies, Neutralizing
0
HIV Antibodies
0
HIV Antigens
0
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
e1009363Subventions
Organisme : NIAID NIH HHS
ID : UM1 AI068614
Pays : United States
Organisme : NIAID NIH HHS
ID : UM1 AI068618
Pays : United States
Organisme : NIAID NIH HHS
ID : UM1 AI154463
Pays : United States
Organisme : NIAID NIH HHS
ID : UM1 AI069453
Pays : United States
Organisme : NIAID NIH HHS
ID : UM1 AI068635
Pays : United States
Organisme : NIAID NIH HHS
ID : U19 AI128914
Pays : United States
Déclaration de conflit d'intérêts
The authors have declared that no competing interests exist.
Références
Nat Biotechnol. 2015 Jun;33(6):610-6
pubmed: 26006008
Bioinformatics. 2013 Mar 1;29(5):661-3
pubmed: 23325622
Sci Transl Med. 2014 Mar 19;6(228):228ra39
pubmed: 24648342
Genome Res. 2003 Nov;13(11):2498-504
pubmed: 14597658
Lancet. 2008 Nov 29;372(9653):1881-1893
pubmed: 19012954
Science. 2013 Apr 12;340(6129):155-6
pubmed: 23580520
Immunity. 2018 Mar 20;48(3):487-499.e5
pubmed: 29525521
Lancet HIV. 2018 Jul;5(7):e366-e378
pubmed: 29898870
J Exp Med. 2008 Dec 22;205(13):3119-31
pubmed: 19047440
J Infect Dis. 2018 Nov 5;218(12):1911-1921
pubmed: 30010906
Vaccine. 2007 Apr 30;25(17):3380-90
pubmed: 17234309
Nat Immunol. 2011 Jul 10;12(8):786-95
pubmed: 21743478
JAMA. 2020 Mar 24;323(12):1124
pubmed: 32207795
Proc Natl Acad Sci U S A. 2014 Nov 4;111(44):15614-21
pubmed: 25349379
Stat Biopharm Res. 2009 Feb 1;1(1):81-91
pubmed: 20072667
J Infect Dis. 2012 Jul 15;206(2):258-66
pubmed: 22561365
Nucleic Acids Res. 2013 Jan;41(Database issue):D1228-33
pubmed: 23180781
Genome Med. 2017 Jan 30;9(1):11
pubmed: 28137280
Bioinformatics. 2009 Apr 15;25(8):1091-3
pubmed: 19237447
Nat Commun. 2019 Jan 10;10(1):127
pubmed: 30631079
Immunity. 2016 Jan 19;44(1):194-206
pubmed: 26795250
Cell Host Microbe. 2016 Feb 10;19(2):181-93
pubmed: 26867177
Mamm Genome. 2018 Aug;29(7-8):593-602
pubmed: 29982912
Anal Chem. 2012 Jan 17;84(2):1003-11
pubmed: 22122760
Vaccine. 2008 Sep 15;26(39):5004-13
pubmed: 18691624
PLoS One. 2014 Feb 04;9(2):e87572
pubmed: 24504509
Trends Microbiol. 2017 Jul;25(7):573-584
pubmed: 28139375
PLoS One. 2019 Feb 26;14(2):e0210497
pubmed: 30807573
Viruses. 2015 Dec 23;8(1):
pubmed: 26703718
Neuromuscul Disord. 2007 Jan;17(1):69-76
pubmed: 17070050
Nat Immunol. 2009 Jan;10(1):116-125
pubmed: 19029902
J Clin Invest. 2019 Nov 1;129(11):4838-4849
pubmed: 31589165
Nat Med. 2016 Jul;22(7):762-70
pubmed: 27239761
Biochem Biophys Res Commun. 2020 Jan 8;521(2):326-332
pubmed: 31668371
Front Immunol. 2018 Jun 22;9:1420
pubmed: 29988341
Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):E3503-12
pubmed: 23151505
N Engl J Med. 2012 Apr 5;366(14):1275-86
pubmed: 22475592
PLoS One. 2013 Sep 26;8(9):e75665
pubmed: 24086607
Sci Transl Med. 2019 Aug 28;11(507):
pubmed: 31462510
Cell Syst. 2015 Dec 23;1(6):417-425
pubmed: 26771021
Nat Med. 2018 Jun;24(6):847-856
pubmed: 29785023
Immunity. 2015 Dec 15;43(6):1186-98
pubmed: 26682988
N Engl J Med. 2009 Dec 3;361(23):2209-20
pubmed: 19843557
Nat Immunol. 2014 Feb;15(2):195-204
pubmed: 24336226
Cold Spring Harb Perspect Biol. 2018 Aug 1;10(8):
pubmed: 29038113
Blood. 2013 Jun 27;121(26):5176-83
pubmed: 23613519
Cell Rep. 2017 Aug 29;20(9):2251-2261
pubmed: 28854372
Curr Opin HIV AIDS. 2010 Sep;5(5):357-61
pubmed: 20978374
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W167-74
pubmed: 24861621
F1000Res. 2016 Jun 15;5:1385
pubmed: 28357036
J Infect Dis. 2011 Apr 1;203(7):921-9
pubmed: 21357945
Immunity. 2008 Jul 18;29(1):150-64
pubmed: 18631455
Immunol Rev. 2017 Jan;275(1):245-261
pubmed: 28133811
Lancet Infect Dis. 2011 Jul;11(7):507-15
pubmed: 21570355
Nat Commun. 2019 Feb 20;10(1):863
pubmed: 30787294
J Virol. 2016 Jun 10;90(13):5850-5854
pubmed: 27053550
J Virol. 2014 Feb;88(3):1809-14
pubmed: 24257612
Nat Commun. 2018 Nov 9;9(1):4735
pubmed: 30413720
Sci Transl Med. 2019 Sep 18;11(510):
pubmed: 31534016
J Immunol. 2017 Nov 1;199(9):3293-3305
pubmed: 28947539
Lancet Infect Dis. 2012 Jul;12(7):531-7
pubmed: 22652344
J Virol. 2014 Jul;88(14):7715-26
pubmed: 24807721
Nat Rev Immunol. 2013 Jan;13(1):46-57
pubmed: 23237964
Cell. 2013 Oct 24;155(3):531-9
pubmed: 24243013
Cell. 2015 Nov 5;163(4):988-98
pubmed: 26544943
Sci Transl Med. 2014 Mar 19;6(228):228ra38
pubmed: 24648341
Proc Natl Acad Sci U S A. 2017 Feb 28;114(9):2425-2430
pubmed: 28193898
BMC Mol Biol. 2017 Mar 9;18(1):6
pubmed: 28274199