Handcrafted MRI radiomics and machine learning: Classification of indeterminate solid adrenal lesions.

Adrenal glands Chemical shift imaging Machine learning Magnetic resonance imaging Neoplasms

Journal

Magnetic resonance imaging
ISSN: 1873-5894
Titre abrégé: Magn Reson Imaging
Pays: Netherlands
ID NLM: 8214883

Informations de publication

Date de publication:
06 2021
Historique:
received: 21 05 2020
revised: 16 09 2020
accepted: 11 03 2021
pubmed: 18 3 2021
medline: 20 8 2021
entrez: 17 3 2021
Statut: ppublish

Résumé

To assess a radiomic machine learning (ML) model in classifying solid adrenal lesions (ALs) without fat signal drop on chemical shift (CS) as benign or malignant. 55 indeterminate ALs (21 lipid poor adenomas, 15 benign pheocromocytomas, 1 oncocytoma, 12 metastases, 6 primary tumors) showing no fat signal drop on CS were retrospectively included. Manual 3D segmentation on T2-weighted and CS images was performed for subsequent radiomic feature extraction. After feature stability testing and an 80-20% train-test split, the train set was balanced via oversampling. Following a multi-step feature selection, an Extra Trees model was tuned with 5-fold stratified cross-validation in the train set and then tested on the hold-out test set. A total of 3396 features were extracted from each AL, of which 133 resulted unstable while none had low variance (< 0.01). Highly correlated (r > 0.8) features were also excluded, leaving 440 parameters. Among these, Support Vector Machine 5-fold stratified cross-validated recursive feature elimination selected a subset of 6 features. ML obtained a cross-validation accuracy of 0.94 on the train and 0.91 on the test sets. Precision, recall and F1 score were respectively 0.92, 0.91 and 0.91. Our MRI handcrafted radiomics and ML pipeline proved useful to characterize benign and malignant solid indeterminate adrenal lesions.

Identifiants

pubmed: 33727148
pii: S0730-725X(21)00039-4
doi: 10.1016/j.mri.2021.03.009
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

52-58

Informations de copyright

Copyright © 2021 Elsevier Inc. All rights reserved.

Auteurs

Arnaldo Stanzione (A)

Department of Advanced Biomedical Sciences, University of Naples "Federico II", Italy.

Renato Cuocolo (R)

Department of Advanced Biomedical Sciences, University of Naples "Federico II", Italy; Augmented Reality for Health Monitoring Laboratory (ARHeMLab), Department of Electrical Engineering and Information Technology, University of Naples "Federico II", Italy.

Francesco Verde (F)

Department of Advanced Biomedical Sciences, University of Naples "Federico II", Italy.

Roberta Galatola (R)

Department of Advanced Biomedical Sciences, University of Naples "Federico II", Italy.

Valeria Romeo (V)

Department of Advanced Biomedical Sciences, University of Naples "Federico II", Italy. Electronic address: valeria.romeo@unina.it.

Pier Paolo Mainenti (PP)

Institute of Biostructures and Bioimaging of the National Research Council (CNR), Italy.

Giovanni Aprea (G)

Department of Clinical Medicine and Surgery, University of Naples "Federico II", Italy.

Elia Guadagno (E)

Department of Advanced Biomedical Sciences, University of Naples "Federico II", Italy.

Marialaura Del Basso De Caro (M)

Department of Advanced Biomedical Sciences, University of Naples "Federico II", Italy.

Simone Maurea (S)

Department of Advanced Biomedical Sciences, University of Naples "Federico II", Italy.

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