The Effectiveness of Image Augmentation in Deep Learning Networks for Detecting COVID-19: A Geometric Transformation Perspective.

artificial intelligence chest X-ray corona virus data augmentation digital health machine learning radiology transfer learning

Journal

Frontiers in medicine
ISSN: 2296-858X
Titre abrégé: Front Med (Lausanne)
Pays: Switzerland
ID NLM: 101648047

Informations de publication

Date de publication:
2021
Historique:
received: 13 11 2020
accepted: 29 01 2021
entrez: 18 3 2021
pubmed: 19 3 2021
medline: 19 3 2021
Statut: epublish

Résumé

Chest X-ray imaging technology used for the early detection and screening of COVID-19 pneumonia is both accessible worldwide and affordable compared to other non-invasive technologies. Additionally, deep learning methods have recently shown remarkable results in detecting COVID-19 on chest X-rays, making it a promising screening technology for COVID-19. Deep learning relies on a large amount of data to avoid overfitting. While overfitting can result in perfect modeling on the original training dataset, on a new testing dataset it can fail to achieve high accuracy. In the image processing field, an image augmentation step (i.e., adding more training data) is often used to reduce overfitting on the training dataset, and improve prediction accuracy on the testing dataset. In this paper, we examined the impact of geometric augmentations as implemented in several recent publications for detecting COVID-19. We compared the performance of 17 deep learning algorithms with and without different geometric augmentations. We empirically examined the influence of augmentation with respect to detection accuracy, dataset diversity, augmentation methodology, and network size. Contrary to expectation, our results show that the removal of recently used geometrical augmentation steps actually improved the Matthews correlation coefficient (MCC) of 17 models. The MCC without augmentation (MCC = 0.51) outperformed four recent geometrical augmentations (MCC = 0.47 for Data Augmentation 1, MCC = 0.44 for Data Augmentation 2, MCC = 0.48 for Data Augmentation 3, and MCC = 0.49 for Data Augmentation 4). When we retrained a recently published deep learning without augmentation on the same dataset, the detection accuracy significantly increased, with a

Identifiants

pubmed: 33732718
doi: 10.3389/fmed.2021.629134
pmc: PMC7956964
doi:

Types de publication

Journal Article

Langues

eng

Pagination

629134

Informations de copyright

Copyright © 2021 Elgendi, Nasir, Tang, Smith, Grenier, Batte, Spieler, Leslie, Menon, Fletcher, Howard, Ward, Parker and Nicolaou.

Déclaration de conflit d'intérêts

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

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Auteurs

Mohamed Elgendi (M)

Rady Faculty of Health Sciences, University of Manitoba, Winnipeg, MB, Canada.
School of Mechatronic Systems Engineering, Simon Fraser University, Burnaby, BC, Canada.
Nuffield Department of Surgical Sciences, University of Oxford, Oxford, United Kingdom.
School of Electrical and Computer Engineering, University of British Columbia, Vancouver, BC, Canada.

Muhammad Umer Nasir (MU)

Department of Emergency and Trauma Radiology, Vancouver General Hospital, Vancouver, BC, Canada.

Qunfeng Tang (Q)

School of Electrical and Computer Engineering, University of British Columbia, Vancouver, BC, Canada.

David Smith (D)

Department of Radiology, Louisiana State University Health Sciences Center, New Orleans, LA, United States.

John-Paul Grenier (JP)

Department of Radiology, Louisiana State University Health Sciences Center, New Orleans, LA, United States.

Catherine Batte (C)

Department of Physics & Astronomy, Louisiana State University, Baton Rouge, LA, United States.

Bradley Spieler (B)

Department of Radiology, Louisiana State University Health Sciences Center, New Orleans, LA, United States.

William Donald Leslie (WD)

Rady Faculty of Health Sciences, University of Manitoba, Winnipeg, MB, Canada.

Carlo Menon (C)

School of Mechatronic Systems Engineering, Simon Fraser University, Burnaby, BC, Canada.
Biomedical and Mobile Health Technology Laboratory, Department of Health Sciences and Technology, ETH Zurich, Zurich, Switzerland.

Richard Ribbon Fletcher (RR)

D-Lab, Massachusetts Institute of Technology, Cambridge, MA, United States.

Newton Howard (N)

Nuffield Department of Surgical Sciences, University of Oxford, Oxford, United Kingdom.

Rabab Ward (R)

School of Electrical and Computer Engineering, University of British Columbia, Vancouver, BC, Canada.

William Parker (W)

Department of Emergency and Trauma Radiology, Vancouver General Hospital, Vancouver, BC, Canada.

Savvas Nicolaou (S)

Department of Emergency and Trauma Radiology, Vancouver General Hospital, Vancouver, BC, Canada.
Department of Radiology, Faculty of Medicine, University of British Columbia, Vancouver, BC, Canada.

Classifications MeSH