Visualizing anatomically registered data with brainrender.
anatomy
data visualization
neuroscience
none
open source
software
Journal
eLife
ISSN: 2050-084X
Titre abrégé: Elife
Pays: England
ID NLM: 101579614
Informations de publication
Date de publication:
19 03 2021
19 03 2021
Historique:
received:
15
12
2020
accepted:
17
03
2021
pubmed:
20
3
2021
medline:
27
11
2021
entrez:
19
3
2021
Statut:
epublish
Résumé
Three-dimensional (3D) digital brain atlases and high-throughput brain-wide imaging techniques generate large multidimensional datasets that can be registered to a common reference frame. Generating insights from such datasets depends critically on visualization and interactive data exploration, but this a challenging task. Currently available software is dedicated to single atlases, model species or data types, and generating 3D renderings that merge anatomically registered data from diverse sources requires extensive development and programming skills. Here, we present brainrender: an open-source Python package for interactive visualization of multidimensional datasets registered to brain atlases. Brainrender facilitates the creation of complex renderings with different data types in the same visualization and enables seamless use of different atlas sources. High-quality visualizations can be used interactively and exported as high-resolution figures and animated videos. By facilitating the visualization of anatomically registered data, brainrender should accelerate the analysis, interpretation, and dissemination of brain-wide multidimensional data.
Identifiants
pubmed: 33739286
doi: 10.7554/eLife.65751
pii: 65751
pmc: PMC8079143
doi:
pii:
Types de publication
Evaluation Study
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : Wellcome Trust
ID : 214333/Z/18/Z
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 090843/F/09/Z
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 214352/Z/18/Z
Pays : United Kingdom
Informations de copyright
© 2021, Claudi et al.
Déclaration de conflit d'intérêts
FC, AT, LP, TM, RP, TB No competing interests declared
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