Nighttime features derived from topic models for classification of patients with COPD.


Journal

Computers in biology and medicine
ISSN: 1879-0534
Titre abrégé: Comput Biol Med
Pays: United States
ID NLM: 1250250

Informations de publication

Date de publication:
05 2021
Historique:
received: 14 08 2020
revised: 04 03 2021
accepted: 05 03 2021
pubmed: 30 3 2021
medline: 6 7 2021
entrez: 29 3 2021
Statut: ppublish

Résumé

Nighttime symptoms are important indicators of impairment for many diseases and particularly for respiratory diseases such as chronic obstructive pulmonary disease (COPD). The use of wearable sensors to assess sleep in COPD has mainly been limited to the monitoring of limb motions or the duration and continuity of sleep. In this paper we present an approach to concisely describe sleep patterns in subjects with and without COPD. The methodology converts multimodal sleep data into a text representation and uses topic modeling to identify patterns across the dataset composed of more than 6000 assessed nights. This approach enables the discovery of higher level features resembling unique sleep characteristics that are then used to discriminate between healthy subjects and those with COPD and to evaluate patients' disease severity and dyspnea level. Compared to standard features, the discovered latent structures in nighttime data seem to capture important aspects of subjects sleeping behavior related to the effects of COPD and dyspnea.

Identifiants

pubmed: 33780868
pii: S0010-4825(21)00116-5
doi: 10.1016/j.compbiomed.2021.104322
pii:
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

104322

Informations de copyright

Copyright © 2021 Elsevier Ltd. All rights reserved.

Auteurs

Gabriele Spina (G)

HumanTotalCare, Data Science Department, Utrecht, the Netherlands. Electronic address: g.spina@humantotalcare.nl.

Pierluigi Casale (P)

Jheronimous Academy of Data Science, 'S-Hertogenbosch, the Netherlands.

Paul S Albert (PS)

School of Ageing and Chronic Disease, University Hospital Aintree, Liverpool, United Kingdom.

Jennifer Alison (J)

Faculty of Medicine and Health, University of Sydney, Sydney, NSW, Australia.

Judith Garcia-Aymerich (J)

CIBER Epidemiología y Salud Pública (CIBERESP), Barcelona, Spain and Universitat Pompeu Fabra (UPF), Barcelona, Spain.

Christian F Clarenbach (CF)

Department of Pulmonology, University Hospital Zurich, Zurich, Switzerland.

Richard W Costello (RW)

Department of Respiratory Medicine, Royal College of Surgeons, Dublin, Ireland.

Nidia A Hernandes (NA)

Laboratory of Research in Respiratory Physiotherapy, Dept. of Physiotherapy, State University of Londrina (UEL), Londrina, Brazil.

Jörg D Leuppi (JD)

University Department of Medicine, Cantonal Hospital Baselland and University of Basel, Basel, Switzerland.

Rafael Mesquita (R)

Department of Research and Education, CIRO+, Centre of Expertise for Chronic Organ Failure, Horn and MUMC+ Dept. of Respiratory Medicine, Maastricht University Medical Center+, the Netherlands.

Sally J Singh (SJ)

NIHR Leicester Respiratory Biomedical Research Centre, Dept of Respiratory Sciences, University of Leicester, Leicester, UK.

Frank W J M Smeenk (FWJM)

Dept. of Respiratory Medicine, Catharina Hospital, Eindhoven, the Netherlands.

Ruth Tal-Singer (R)

GlaxoSmithKline R&D, King of Prussia, PA, USA.

Emiel F M Wouters (EFM)

Department of Research and Education, CIRO+, Centre of Expertise for Chronic Organ Failure, Horn and MUMC+ Dept. of Respiratory Medicine, Maastricht University Medical Center+, the Netherlands.

Martijn A Spruit (MA)

Department of Research and Education, CIRO+, Centre of Expertise for Chronic Organ Failure, Horn and MUMC+ Dept. of Respiratory Medicine, Maastricht University Medical Center+, the Netherlands; REVAL - Rehabilitation Research Center, BIOMED - Biomedical Research Institute, Faculty of Medicine and Life Sciences, Hasselt University, Diepenbeek, Belgium, and NUTRIM School of Nutrition and Translational Research in Metabolism, Maastricht, the Netherlands.

Albertus C den Brinker (AC)

Philips Research, Data Science Department, Eindhoven, the Netherlands.

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Classifications MeSH