DNA Methylation Regulates Transcription Factor-Specific Neurodevelopmental but Not Sexually Dimorphic Gene Expression Dynamics in Zebra Finch Telencephalon.

DNA methylation brain development dosage compensation epigenetics gene expression song learning zebra finch

Journal

Frontiers in cell and developmental biology
ISSN: 2296-634X
Titre abrégé: Front Cell Dev Biol
Pays: Switzerland
ID NLM: 101630250

Informations de publication

Date de publication:
2021
Historique:
received: 15 07 2020
accepted: 17 02 2021
entrez: 5 4 2021
pubmed: 6 4 2021
medline: 6 4 2021
Statut: epublish

Résumé

Song learning in zebra finches (

Identifiants

pubmed: 33816458
doi: 10.3389/fcell.2021.583555
pmc: PMC8017237
doi:

Types de publication

Journal Article

Langues

eng

Pagination

583555

Informations de copyright

Copyright © 2021 Diddens, Coussement, Frankl-Vilches, Majumdar, Steyaert, Ter Haar, Galle, De Meester, De Keulenaer, Van Criekinge, Cornil, Balthazart, Van Der Linden, De Meyer and Vanden Berghe.

Déclaration de conflit d'intérêts

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Références

Genome Biol. 2019 Sep 26;20(1):196
pubmed: 31554518
Front Cell Neurosci. 2019 Dec 04;13:534
pubmed: 31866827
Bioinformatics. 2010 Jan 1;26(1):139-40
pubmed: 19910308
Cell. 2017 Nov 16;171(5):1151-1164.e16
pubmed: 29056337
J Neurobiol. 1997 Nov;33(5):572-84
pubmed: 9369460
Gen Comp Endocrinol. 2014 Aug 1;204:104-13
pubmed: 24837606
Adv Exp Med Biol. 2009;665:117-29
pubmed: 20429420
Bioinformatics. 2011 Apr 1;27(7):1017-8
pubmed: 21330290
Annu Rev Genet. 2008;42:733-72
pubmed: 18729722
Neural Plast. 2016;2016:7931693
pubmed: 26881132
Comput Struct Biotechnol J. 2019 Apr 09;17:507-515
pubmed: 31011409
Front Behav Neurosci. 2018 Feb 05;12:15
pubmed: 29459824
J Neurosci. 1985 Jun;5(6):1556-62
pubmed: 4009245
Sci Rep. 2016 Feb 11;6:20957
pubmed: 26864856
Science. 2017 May 5;356(6337):
pubmed: 28473536
Ann N Y Acad Sci. 2004 Jun;1016:540-59
pubmed: 15313794
RNA. 2018 Oct;24(10):1351-1362
pubmed: 30002084
Cell Rep. 2012 Aug 30;2(2):345-57
pubmed: 22854024
Science. 2013 Aug 9;341(6146):1237905
pubmed: 23828890
Nat Rev Neurosci. 2005 Nov;6(11):877-88
pubmed: 16261181
Nat Commun. 2019 Aug 29;10(1):3892
pubmed: 31467272
Bioinformatics. 2013 Jul 01;29(13):1647-53
pubmed: 23658421
J Neurosci. 2014 Feb 19;34(8):2860-70
pubmed: 24553927
Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):10335-40
pubmed: 24982149
J Biol. 2007;6(1):2
pubmed: 17352797
Nat Commun. 2019 Jun 4;10(1):2449
pubmed: 31164644
Nucleic Acids Res. 2015 Apr 20;43(7):e47
pubmed: 25605792
J Mol Biol. 2019 Nov 2;:
pubmed: 31689433
Nat Rev Neurosci. 2020 Jan;21(1):36-51
pubmed: 31804615
Annu Rev Neurosci. 2013 Jul 8;36:489-517
pubmed: 23750515
Proc Natl Acad Sci U S A. 2015 Jun 2;112(22):6800-6
pubmed: 25739960
Cold Spring Harb Perspect Biol. 2019 Jun 3;11(6):
pubmed: 31160350
Nat Commun. 2017 Oct 24;8(1):1122
pubmed: 29066820
BMC Neurosci. 2009 Mar 23;10:24
pubmed: 19309515
Front Cell Neurosci. 2017 Jun 28;11:184
pubmed: 28701927
Genome Biol. 2017 Aug 7;18(1):151
pubmed: 28784146
Sci Rep. 2019 Jan 29;9(1):898
pubmed: 30696919
Mol Cell. 2018 Sep 6;71(5):848-857.e6
pubmed: 30078725
Trends Biotechnol. 2018 Sep;36(9):952-965
pubmed: 29724495
Psychoneuroendocrinology. 2019 Feb;100:96-105
pubmed: 30299260
Nucleic Acids Res. 2016 Jan 4;44(D1):D110-5
pubmed: 26531826
Sci Rep. 2019 Mar 26;9(1):5185
pubmed: 30914725
Nat Rev Neurosci. 2016 Jul;17(7):411-23
pubmed: 27150399
BMC Genomics. 2018 Apr 3;19(1):231
pubmed: 29614959
Hormones (Athens). 2019 Jun;18(2):229-236
pubmed: 30747411
Essays Biochem. 2019 Dec 20;63(6):727-741
pubmed: 31755929
Epigenomics. 2015 Aug;7(5):813-28
pubmed: 26366945
Genome Res. 2010 Feb;20(2):180-9
pubmed: 20009012
Neural Plast. 2016;2016:5214961
pubmed: 26881114
BMC Bioinformatics. 2010 Nov 30;11:587
pubmed: 21118553
Curr Opin Pediatr. 2003 Dec;15(6):567-71
pubmed: 14631200
Proc Biol Sci. 2018 May 16;285(1878):
pubmed: 29720411
Elife. 2015 Mar 17;4:
pubmed: 25779349
Nat Neurosci. 2015 May;18(5):690-7
pubmed: 25821913
Front Bioeng Biotechnol. 2018 Apr 13;6:46
pubmed: 29707539
Bioinformatics. 2013 Jan 1;29(1):15-21
pubmed: 23104886
Sci Rep. 2017 Dec 22;7(1):18078
pubmed: 29273787
J Neurosci Methods. 2007 Aug 15;164(1):116-9
pubmed: 17532050
Brain Res Bull. 2018 Jan;136:101-108
pubmed: 28284900
Nucleic Acids Res. 2005 Oct 13;33(18):5868-77
pubmed: 16224102
Cell Tissue Res. 2015 Jan;359(1):99-109
pubmed: 25092546
Essays Biochem. 2019 Dec 20;63(6):639-648
pubmed: 31755932
Dev Cell. 2011 Apr 19;20(4):419-29
pubmed: 21497756
Bioinformatics. 2011 Jun 1;27(11):1571-2
pubmed: 21493656
Cell Rep. 2017 Jun 13;19(11):2383-2395
pubmed: 28614722
Nat Commun. 2019 Apr 3;10(1):1523
pubmed: 30944313
J Can Acad Child Adolesc Psychiatry. 2011 Nov;20(4):265-76
pubmed: 22114608
Proc Natl Acad Sci U S A. 2005 May 24;102(21):7730-5
pubmed: 15894627
Genome Res. 2010 Apr;20(4):512-8
pubmed: 20357053
BMC Biol. 2007 Sep 20;5:40
pubmed: 17883843
Int Rev Neurobiol. 2014;116:233-50
pubmed: 25172477
Proc Natl Acad Sci U S A. 2012 Oct 16;109 Suppl 2:17245-52
pubmed: 23045667
Front Cell Neurosci. 2015 Aug 25;9:331
pubmed: 26379502
Science. 2019 Oct 4;366(6461):50-54
pubmed: 31604300
J Exp Biol. 2013 Oct 1;216(Pt 19):3682-92
pubmed: 24006346
Cereb Cortex. 2019 Jun 1;29(6):2384-2395
pubmed: 29771284
Nat Neurosci. 2004 Oct;7(10):1034-9
pubmed: 15452574

Auteurs

Jolien Diddens (J)

Laboratory of Protein Chemistry, Proteomics and Epigenetic Signaling (PPES), Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium.

Louis Coussement (L)

Biobix: Laboratory of Bioinformatics and Computational Genomics, Department of Data Analysis and Mathematical Modeling, Ghent University, Ghent, Belgium.

Carolina Frankl-Vilches (C)

Department of Behavioral Neurobiology, Max Planck Institute for Ornithology, Seewiesen, Germany.

Gaurav Majumdar (G)

Bio-Imaging Lab, Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium.

Sandra Steyaert (S)

Biobix: Laboratory of Bioinformatics and Computational Genomics, Department of Data Analysis and Mathematical Modeling, Ghent University, Ghent, Belgium.

Sita M Ter Haar (SM)

Laboratory of Behavioral Neuroendocrinology, GIGA Neuroscience, University of Liège, Liège, Belgium.

Jeroen Galle (J)

Biobix: Laboratory of Bioinformatics and Computational Genomics, Department of Data Analysis and Mathematical Modeling, Ghent University, Ghent, Belgium.

Ellen De Meester (E)

Laboratory of Pharmaceutical Biotechnology, Faculty of Pharmaceutical Sciences, Ghent University, Ghent, Belgium.

Sarah De Keulenaer (S)

Laboratory of Pharmaceutical Biotechnology, Faculty of Pharmaceutical Sciences, Ghent University, Ghent, Belgium.

Wim Van Criekinge (W)

Biobix: Laboratory of Bioinformatics and Computational Genomics, Department of Data Analysis and Mathematical Modeling, Ghent University, Ghent, Belgium.

Charlotte A Cornil (CA)

Laboratory of Behavioral Neuroendocrinology, GIGA Neuroscience, University of Liège, Liège, Belgium.

Jacques Balthazart (J)

Laboratory of Behavioral Neuroendocrinology, GIGA Neuroscience, University of Liège, Liège, Belgium.

Annemie Van Der Linden (A)

Bio-Imaging Lab, Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium.

Tim De Meyer (T)

Biobix: Laboratory of Bioinformatics and Computational Genomics, Department of Data Analysis and Mathematical Modeling, Ghent University, Ghent, Belgium.

Wim Vanden Berghe (W)

Laboratory of Protein Chemistry, Proteomics and Epigenetic Signaling (PPES), Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium.

Classifications MeSH