An open dataset of

data resource drug resistance evolution genomic epidemiology genomics malaria plasmodium falciparum population genetics rapid diagnostic test failure

Journal

Wellcome open research
ISSN: 2398-502X
Titre abrégé: Wellcome Open Res
Pays: England
ID NLM: 101696457

Informations de publication

Date de publication:
2021
Historique:
accepted: 15 01 2021
entrez: 7 4 2021
pubmed: 8 4 2021
medline: 8 4 2021
Statut: epublish

Résumé

MalariaGEN is a data-sharing network that enables groups around the world to work together on the genomic epidemiology of malaria. Here we describe a new release of curated genome variation data on 7,000

Identifiants

pubmed: 33824913
doi: 10.12688/wellcomeopenres.16168.1
pmc: PMC8008441
doi:

Banques de données

figshare
['10.6084/m9.figshare.13388603']

Types de publication

Journal Article

Langues

eng

Pagination

42

Subventions

Organisme : NIAID NIH HHS
ID : R01 AI101713
Pays : United States
Organisme : Medical Research Council
ID : MR/M006212/1
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 204911/Z/16/Z
Pays : United Kingdom
Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : World Health Organization
ID : 001
Pays : International

Informations de copyright

Copyright: © 2021 MalariaGEN et al.

Déclaration de conflit d'intérêts

No competing interests were disclosed.

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Auteurs

Ambroise Ahouidi (A)

Hopital Le Dantec, Universite Cheikh Anta Diop, Dakar, Senegal.

Mozam Ali (M)

Wellcome Sanger Institute, Hinxton, UK.

Jacob Almagro-Garcia (J)

Wellcome Sanger Institute, Hinxton, UK.
MRC Centre for Genomics and Global Health, Big Data Institute, University of Oxford, Oxford, UK.

Alfred Amambua-Ngwa (A)

Wellcome Sanger Institute, Hinxton, UK.
Medical Research Council Unit The Gambia, at the London School of Hygiene and Tropical Medicine, Banjul, The Gambia.

Chanaki Amaratunga (C)

National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, USA.

Roberto Amato (R)

Wellcome Sanger Institute, Hinxton, UK.
MRC Centre for Genomics and Global Health, Big Data Institute, University of Oxford, Oxford, UK.

Lucas Amenga-Etego (L)

Navrongo Health Research Centre, Ghana Health Service, Navrongo, Ghana.
West African Centre for Cell Biology of Infectious Pathogens (WACCBIP), University of Ghana, Accra, Ghana.

Ben Andagalu (B)

United States Army Medical Research Directorate-Africa, Kenya Medical Research Institute/Walter Reed Project, Kisumu, Kenya.

Tim J C Anderson (TJC)

Texas Biomedical Research Institute, San Antonio, USA.

Voahangy Andrianaranjaka (V)

Université d'Antananarivo, Antananarivo, Madagascar.

Tobias Apinjoh (T)

University of Buea, Buea, Cameroon.

Cristina Ariani (C)

Wellcome Sanger Institute, Hinxton, UK.

Elizabeth A Ashley (EA)

Mahidol-Oxford Tropical Medicine Research Unit (MORU), Bangkok, Thailand.

Sarah Auburn (S)

Menzies School of Health Research, Darwin, Australia.
Nuffield Department of Medicine, University of Oxford, Oxford, UK.

Gordon Awandare (G)

West African Centre for Cell Biology of Infectious Pathogens (WACCBIP), University of Ghana, Accra, Ghana.
University of Ghana, Legon, Ghana.

Hampate Ba (H)

Institut National de Recherche en Santé Publique, Nouakchott, Mauritania.

Vito Baraka (V)

National Institute for Medical Research (NIMR), Dar es Salaam, Tanzania.
Department of Epidemiology, International Health Unit, University of Antwerp, Antwerp, Belgium.

Alyssa E Barry (AE)

Deakin University, Geelong, Australia.
Burnet Institute, Melbourne, Australia.
Walter and Eliza Hall Institute, Melbourne, Australia.

Philip Bejon (P)

KEMRI Wellcome Trust Research Programme, Kilifi, Kenya.

Gwladys I Bertin (GI)

Institute of Research for Development (IRD), Paris, France.

Maciej F Boni (MF)

Nuffield Department of Medicine, University of Oxford, Oxford, UK.
Oxford University Clinical Research Unit (OUCRU), Ho Chi Minh City, Vietnam.

Steffen Borrmann (S)

Institute for Tropical Medicine, University of Tübingen, Tübingen, Germany.

Teun Bousema (T)

London School of Hygiene and Tropical Medicine, London, UK.
Radboud University Medical Center, Nijmegen, The Netherlands.

Oralee Branch (O)

NYU School of Medicine Langone Medical Center, New York, USA.

Peter C Bull (PC)

KEMRI Wellcome Trust Research Programme, Kilifi, Kenya.
Department of Pathology, University of Cambridge, Cambridge, UK.

George B J Busby (GBJ)

MRC Centre for Genomics and Global Health, Big Data Institute, University of Oxford, Oxford, UK.

Thanat Chookajorn (T)

Mahidol University, Bangkok, Thailand.

Kesinee Chotivanich (K)

Mahidol University, Bangkok, Thailand.

Antoine Claessens (A)

Medical Research Council Unit The Gambia, at the London School of Hygiene and Tropical Medicine, Banjul, The Gambia.
LPHI, MIVEGEC, INSERM, CNRS, IRD, University of Montpellier, Montpellier, France.

David Conway (D)

London School of Hygiene and Tropical Medicine, London, UK.

Alister Craig (A)

Liverpool School of Tropical Medicine, Liverpool, UK.
Malawi-Liverpool-Wellcome Trust Clinical Research, Blantyre, Malawi.

Umberto D'Alessandro (U)

Medical Research Council Unit The Gambia, at the London School of Hygiene and Tropical Medicine, Banjul, The Gambia.

Souleymane Dama (S)

Malaria Research and Training Centre, University of Science, Techniques and Technologies of Bamako, Bamako, Mali.

Nicholas Pj Day (NP)

Mahidol-Oxford Tropical Medicine Research Unit (MORU), Bangkok, Thailand.

Brigitte Denis (B)

Malawi-Liverpool-Wellcome Trust Clinical Research, Blantyre, Malawi.

Mahamadou Diakite (M)

Malaria Research and Training Centre, University of Science, Techniques and Technologies of Bamako, Bamako, Mali.

Abdoulaye Djimdé (A)

Malaria Research and Training Centre, University of Science, Techniques and Technologies of Bamako, Bamako, Mali.

Christiane Dolecek (C)

Nuffield Department of Medicine, University of Oxford, Oxford, UK.

Arjen M Dondorp (AM)

Mahidol-Oxford Tropical Medicine Research Unit (MORU), Bangkok, Thailand.

Chris Drakeley (C)

London School of Hygiene and Tropical Medicine, London, UK.

Eleanor Drury (E)

Wellcome Sanger Institute, Hinxton, UK.

Patrick Duffy (P)

National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, USA.

Diego F Echeverry (DF)

Centro Internacional de Entrenamiento e Investigaciones Médicas - CIDEIM, Cali, Colombia.
Universidad Icesi, Cali, Colombia.

Thomas G Egwang (TG)

Biotech Laboratories, Kampala, Uganda.

Berhanu Erko (B)

Aklilu Lemma Institute of Pathobiology, Addis Ababa University, Addis Ababa, Ethiopia.

Rick M Fairhurst (RM)

National Institutes of Health (NIH), Bethesda, USA.

Abdul Faiz (A)

Dev Care Foundation, Dhaka, Bangladesh.

Caterina A Fanello (CA)

Mahidol-Oxford Tropical Medicine Research Unit (MORU), Bangkok, Thailand.

Mark M Fukuda (MM)

Department of Immunology and Medicine, US Army Medical Component, Armed Forces Research Institute of Medical Sciences (USAMC-AFRIMS), Bangkok, Thailand.

Dionicia Gamboa (D)

Laboratorio ICEMR-Amazonia, Laboratorios de Investigacion y Desarrollo, Facultad de Ciencias y Filosofia, Universidad Peruana Cayetano Heredia, Lima, Peru.

Anita Ghansah (A)

Nogouchi Memorial Institute for Medical Research, Legon-Accra, Ghana.

Lemu Golassa (L)

Aklilu Lemma Institute of Pathobiology, Addis Ababa University, Addis Ababa, Ethiopia.

Sonia Goncalves (S)

Wellcome Sanger Institute, Hinxton, UK.

William L Hamilton (WL)

Wellcome Sanger Institute, Hinxton, UK.
Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK.

G L Abby Harrison (GLA)

Walter and Eliza Hall Institute, Melbourne, Australia.

Lee Hart (L)

MRC Centre for Genomics and Global Health, Big Data Institute, University of Oxford, Oxford, UK.

Christa Henrichs (C)

MRC Centre for Genomics and Global Health, Big Data Institute, University of Oxford, Oxford, UK.

Tran Tinh Hien (TT)

Oxford University Clinical Research Unit (OUCRU), Ho Chi Minh City, Vietnam.
Centre for Tropical Medicine and Global Health, University of Oxford, Oxford, UK.

Catherine A Hill (CA)

Department of Entomology, Purdue University, West Lafayette, USA.

Abraham Hodgson (A)

Ghana Health Service, Ministry of Health, Accra, Ghana.

Christina Hubbart (C)

Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.

Mallika Imwong (M)

Mahidol University, Bangkok, Thailand.

Deus S Ishengoma (DS)

National Institute for Medical Research (NIMR), Dar es Salaam, Tanzania.
East African Consortium for Clinical Research (EACCR), Dar es Salaam, Tanzania.

Scott A Jackson (SA)

Center for Applied Genetic Technologies, University of Georgia, Athens, GA, USA.

Chris G Jacob (CG)

Wellcome Sanger Institute, Hinxton, UK.

Ben Jeffery (B)

MRC Centre for Genomics and Global Health, Big Data Institute, University of Oxford, Oxford, UK.

Anna E Jeffreys (AE)

Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.

Kimberly J Johnson (KJ)

MRC Centre for Genomics and Global Health, Big Data Institute, University of Oxford, Oxford, UK.

Dushyanth Jyothi (D)

Wellcome Sanger Institute, Hinxton, UK.

Claire Kamaliddin (C)

Institute of Research for Development (IRD), Paris, France.

Edwin Kamau (E)

Walter Reed Army Institute of Research, U.S. Military HIV Research Program, Silver Spring, MD, USA.

Mihir Kekre (M)

Wellcome Sanger Institute, Hinxton, UK.

Krzysztof Kluczynski (K)

MRC Centre for Genomics and Global Health, Big Data Institute, University of Oxford, Oxford, UK.

Theerarat Kochakarn (T)

Wellcome Sanger Institute, Hinxton, UK.
Mahidol University, Bangkok, Thailand.

Abibatou Konaté (A)

University Félix Houphouët-Boigny, Abidjan, Cote d'Ivoire.

Dominic P Kwiatkowski (DP)

Wellcome Sanger Institute, Hinxton, UK.
MRC Centre for Genomics and Global Health, Big Data Institute, University of Oxford, Oxford, UK.
Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.

Myat Phone Kyaw (MP)

The Myanmar Oxford Clinical Research Unit, University of Oxford, Yangon, Myanmar.
University of Public Health, Yangon, Myanmar.

Pharath Lim (P)

National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, USA.
Medical Care Development International, Maryland, USA.

Chanthap Lon (C)

Department of Immunology and Medicine, US Army Medical Component, Armed Forces Research Institute of Medical Sciences (USAMC-AFRIMS), Bangkok, Thailand.

Kovana M Loua (KM)

Institut National de Santé Publique, Conakry, Guinea.

Oumou Maïga-Ascofaré (O)

Malaria Research and Training Centre, University of Science, Techniques and Technologies of Bamako, Bamako, Mali.
Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany.
Research in Tropical Medicine, Kwame Nkrumah University of Sciences and Technology, Kumasi, Ghana.

Cinzia Malangone (C)

Wellcome Sanger Institute, Hinxton, UK.

Magnus Manske (M)

Wellcome Sanger Institute, Hinxton, UK.

Jutta Marfurt (J)

Menzies School of Health Research, Darwin, Australia.

Kevin Marsh (K)

Nuffield Department of Medicine, University of Oxford, Oxford, UK.
African Academy of Sciences, Nairobi, Kenya.

Mayfong Mayxay (M)

Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit (LOMWRU), Vientiane, Lao People's Democratic Republic.
Institute of Research and Education Development (IRED), University of Health Sciences, Ministry of Health, Vientiane, Lao People's Democratic Republic.

Alistair Miles (A)

Wellcome Sanger Institute, Hinxton, UK.
MRC Centre for Genomics and Global Health, Big Data Institute, University of Oxford, Oxford, UK.

Olivo Miotto (O)

Wellcome Sanger Institute, Hinxton, UK.
MRC Centre for Genomics and Global Health, Big Data Institute, University of Oxford, Oxford, UK.
Mahidol-Oxford Tropical Medicine Research Unit (MORU), Bangkok, Thailand.

Victor Mobegi (V)

School of Medicine, University of Nairobi, Nairobi, Kenya.

Olugbenga A Mokuolu (OA)

Department of Paediatrics and Child Health, University of Ilorin, Ilorin, Nigeria.

Jacqui Montgomery (J)

Institute of Vector-Borne Disease, Monash University, Clayton, Victoria, 3800, Australia.

Ivo Mueller (I)

Walter and Eliza Hall Institute, Melbourne, Australia.
Barcelona Centre for International Health Research, Barcelona, Spain.

Paul N Newton (PN)

Wellcome Trust-Mahosot Hospital-Oxford Tropical Medicine Research Collaboration, Vientiane, Lao People's Democratic Republic.

Thuy Nguyen (T)

Wellcome Sanger Institute, Hinxton, UK.

Thuy-Nhien Nguyen (TN)

Oxford University Clinical Research Unit (OUCRU), Ho Chi Minh City, Vietnam.

Harald Noedl (H)

MARIB - Malaria Research Initiative Bandarban, Bandarban, Bangladesh.

Francois Nosten (F)

Nuffield Department of Medicine, University of Oxford, Oxford, UK.
Shoklo Malaria Research Unit, Bangkok, Thailand.

Rintis Noviyanti (R)

Eijkman Institute for Molecular Biology, Jakarta, Indonesia.

Alexis Nzila (A)

King Fahid University of Petroleum and Minerals (KFUMP), Dharhran, Saudi Arabia.

Lynette I Ochola-Oyier (LI)

KEMRI Wellcome Trust Research Programme, Kilifi, Kenya.

Harold Ocholla (H)

KEMRI - Centres for Disease Control and Prevention (CDC) Research Program, Kisumu, Kenya.
Centre for Bioinformatics and Biotechnology, University of Nairobi, Nairobi, Kenya.

Abraham Oduro (A)

Navrongo Health Research Centre, Ghana Health Service, Navrongo, Ghana.

Irene Omedo (I)

KEMRI Wellcome Trust Research Programme, Kilifi, Kenya.

Marie A Onyamboko (MA)

Kinshasa School of Public Health, University of Kinshasa, Kinshasa, Congo, Democratic Republic.

Jean-Bosco Ouedraogo (JB)

Institut de Recherche en Sciences de la Santé, Ouagadougou, Burkina Faso.

Kolapo Oyebola (K)

Nigerian Institute of Medical Research, Lagos, Nigeria.
Parasitology and Bioinformatics Unit, Faculty of Science, University of Lagos, Lagos, Nigeria.

Richard D Pearson (RD)

Wellcome Sanger Institute, Hinxton, UK.
MRC Centre for Genomics and Global Health, Big Data Institute, University of Oxford, Oxford, UK.

Norbert Peshu (N)

KEMRI Wellcome Trust Research Programme, Kilifi, Kenya.

Aung Pyae Phyo (AP)

Mahidol-Oxford Tropical Medicine Research Unit (MORU), Bangkok, Thailand.
Shoklo Malaria Research Unit, Bangkok, Thailand.

Chris V Plowe (CV)

School of Medicine, University of Maryland, Baltimore, MD, USA.

Ric N Price (RN)

Mahidol-Oxford Tropical Medicine Research Unit (MORU), Bangkok, Thailand.
Menzies School of Health Research, Darwin, Australia.
Centre for Tropical Medicine and Global Health, University of Oxford, Oxford, UK.

Sasithon Pukrittayakamee (S)

Mahidol University, Bangkok, Thailand.

Milijaona Randrianarivelojosia (M)

Institut Pasteur de Madagascar, Antananarivo, Madagascar.
Universités d'Antananarivo et de Mahajanga, Antananarivo, Madagascar.

Julian C Rayner (JC)

Wellcome Sanger Institute, Hinxton, UK.

Pascal Ringwald (P)

World Health Organization (WHO), Geneva, Switzerland.

Kirk A Rockett (KA)

Wellcome Sanger Institute, Hinxton, UK.
Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.

Katherine Rowlands (K)

Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.

Lastenia Ruiz (L)

Universidad Nacional de la Amazonia Peruana, Iquitos, Peru.

David Saunders (D)

Department of Immunology and Medicine, US Army Medical Component, Armed Forces Research Institute of Medical Sciences (USAMC-AFRIMS), Bangkok, Thailand.

Alex Shayo (A)

Nelson Mandela Institute of Science and Technology, Arusha, Tanzania.

Peter Siba (P)

Papua New Guinea Institute of Medical Research, Goroka, Papua New Guinea.

Victoria J Simpson (VJ)

MRC Centre for Genomics and Global Health, Big Data Institute, University of Oxford, Oxford, UK.

Jim Stalker (J)

Wellcome Sanger Institute, Hinxton, UK.

Xin-Zhuan Su (XZ)

National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, USA.

Colin Sutherland (C)

London School of Hygiene and Tropical Medicine, London, UK.

Shannon Takala-Harrison (S)

Center for Vaccine Development and Global Health, University of Maryland, School of Medicine, Baltimore, MD, USA.

Livingstone Tavul (L)

Papua New Guinea Institute of Medical Research, Goroka, Papua New Guinea.

Vandana Thathy (V)

KEMRI Wellcome Trust Research Programme, Kilifi, Kenya.
Department of Microbiology and Immunology, Columbia University Irving Medical Center, New York, New York, USA.

Antoinette Tshefu (A)

University of Kinshasa, Kinshasa, Congo, Democratic Republic.

Federica Verra (F)

Sapienza University of Rome, Rome, Italy.

Joseph Vinetz (J)

Laboratorio ICEMR-Amazonia, Laboratorios de Investigacion y Desarrollo, Facultad de Ciencias y Filosofia, Universidad Peruana Cayetano Heredia, Lima, Peru.
Yale School of Medicine, New Haven, CT, USA.

Thomas E Wellems (TE)

National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, USA.

Jason Wendler (J)

Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.

Nicholas J White (NJ)

Mahidol-Oxford Tropical Medicine Research Unit (MORU), Bangkok, Thailand.

Ian Wright (I)

MRC Centre for Genomics and Global Health, Big Data Institute, University of Oxford, Oxford, UK.

William Yavo (W)

University Félix Houphouët-Boigny, Abidjan, Cote d'Ivoire.
Malaria Research and Control Center of the National Institute of Public Health, Abidjan, Cote d'Ivoire.

Htut Ye (H)

Department of Medical Research, Yangon, Myanmar.

Classifications MeSH