Python-Embedded Plugin Implementation in ICM+: Novel Tools for Neuromonitoring Time Series Analysis with Examples Using CENTER-TBI Datasets.
Brain monitoring
ICM+ software
Intensive care
Neuro-monitoring
Physiological signal analysis
TBI
Time series analysis
Traumatic brain injury
Journal
Acta neurochirurgica. Supplement
ISSN: 0065-1419
Titre abrégé: Acta Neurochir Suppl
Pays: Austria
ID NLM: 100962752
Informations de publication
Date de publication:
2021
2021
Historique:
entrez:
11
4
2021
pubmed:
12
4
2021
medline:
8
6
2021
Statut:
ppublish
Résumé
With the appearance of publicly available, high-resolution, physiological datasets in neurocritical care, like Collaborative European NeuroTrauma Effectiveness Research in Traumatic Brain Injury (CENTER-TBI), there is a growing need for tools that could be used by clinical researchers to interrogate this information-rich data. The ICM+ software is widely used for processing data acquired from bedside monitors. Considering the growing popularity of scripting simple-syntax programming languages like Python, particularly among clinical researchers, we have developed an interface in ICM+ that provides a streamlined way of adding Python scripting functionality to the ICM+ calculation engine. The new interface imposes certain requirements on the scripts and needs an accompanying descriptor file that tells ICM+ about the functions implemented, so that they become available to the end user in the same way as native ICM+ functions. ICM+ also now includes a tool that eases the creation of Python functions to be imported. The Python extension works very efficiently, and any user with some degree of experience in scripting can use it to enrich capabilities of ICM+. Depending on the data analysed and calculations performed, Python functions are 15-60% slower than built-in ICM+ functions, which is a more-than-acceptable trade-off for empowering ICM+ with the unlimited analytical freedom offered by extensive Python libraries.
Identifiants
pubmed: 33839854
doi: 10.1007/978-3-030-59436-7_48
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
255-260Références
Smielewski P, Czosnyka M, Steiner L, Belestri M, Piechnik S, Pickard J (2005) ICM+: software for on-line analysis of bedside monitoring data after severe head trauma. Intracranial pressure and brain monitoring XII. Springer, New York, pp 43–49
doi: 10.1007/3-211-32318-X_10
Smielewski P, Czosnyka Z, Kasprowicz M, Pickard JD, Czosnyka M (2012) ICM+: a versatile software for assessment of CSF dynamics. Intracranial Pressure and Brain Monitoring XIV. Springer, New York, pp 73–79
Smielewski P, Lavinio A, Timofeev I, Radolovich D, Perkes I, Pickard J, Czosnyka M (2008) ICM+, a flexible platform for investigations of cerebrospinal dynamics in clinical practice. Acta Neurochirurgica Supplements. Springer, New York, pp 145–151
Beqiri E, Smielewski P, Robba C, Czosnyka M, Cabeleira MT, Tas J, Donnelly J, Outtrim JG, Hutchinson P, Menon D (2019) Feasibility of individualised severe traumatic brain injury management using an automated assessment of optimal cerebral perfusion pressure: the COGiTATE phase II study protocol. BMJ Open 9:e030727
doi: 10.1136/bmjopen-2019-030727
Kramer AH, Couillard PL, Zygun DA, Aries MJ, Gallagher CN (2019) Continuous assessment of “optimal” cerebral perfusion pressure in traumatic brain injury: a cohort study of feasibility, reliability, and relation to outcome. Neurocrit Care 30:51–61
doi: 10.1007/s12028-018-0570-4
Liu X, Donnelly J, Czosnyka M, Aries MJ, Brady K, Cardim D, Robba C, Cabeleira M, Kim D-J, Haubrich C (2017) Cerebrovascular pressure reactivity monitoring using wavelet analysis in traumatic brain injury patients: a retrospective study. PLoS Med 14:e1002348
doi: 10.1371/journal.pmed.1002348
Liu X, Maurits NM, Aries MJ, Czosnyka M, Ercole A, Donnelly J, Cardim D, Kim D-J, Dias C, Cabeleira M (2017) Monitoring of optimal cerebral perfusion pressure in traumatic brain injured patients using a multi-window weighting algorithm. J Neurotrauma 34:3081–3088
doi: 10.1089/neu.2017.5003
Maas AIR, Menon DK, Steyerberg EW, Citerio G, Lecky F, Manley GT, Hill S, Legrand V, Sorgner A (2014) Collaborative European NeuroTrauma Effectiveness Research in Traumatic Brain Injury (CENTER-TBI) a prospective longitudinal observational study. Neurosurgery 76:67–80
doi: 10.1227/NEU.0000000000000575
Ohlson JA, Kim S (2015) Linear valuation without OLS: the Theil-Sen estimation approach. Rev Acc Stud 20:395–435
doi: 10.1007/s11142-014-9300-0