Drug repositioning candidates identified using in-silico quasi-quantum molecular simulation demonstrate reduced COVID-19 mortality in 1.5M patient records.


Journal

medRxiv : the preprint server for health sciences
Titre abrégé: medRxiv
Pays: United States
ID NLM: 101767986

Informations de publication

Date de publication:
06 Apr 2021
Historique:
pubmed: 15 4 2021
medline: 15 4 2021
entrez: 14 4 2021
Statut: epublish

Résumé

Drug repositioning is a key component of COVID-19 pandemic response, through identification of existing drugs that can effectively disrupt COVID-19 disease processes, contributing valuable insights into disease pathways. Traditional non Using a novel in-silico quasi-quantum molecular simulation platform that analyzes energies and electron densities of both target proteins and candidate interruption compounds on High Performance Computing (HPC), we identified a list of FDA-approved compounds with potential to interrupt specific SARS-CoV-2 proteins. Subsequently we used 1.5M patient records from the National COVID Cohort Collaborative to create matched cohorts to refine our in-silico hits to those candidates that show statistically significant clinical effect. We identified four drugs, Metformin, Triamcinolone, Amoxicillin and Hydrochlorothiazide, that were associated with reduced mortality by 27%, 26%, 26%, and 23%, respectively, in COVID-19 patients. Together, these findings provide support to our hypothesis that in-silico simulation of active compounds against SARS-CoV-2 proteins followed by statistical analysis of electronic health data results in effective therapeutics identification.

Sections du résumé

Background UNASSIGNED
Drug repositioning is a key component of COVID-19 pandemic response, through identification of existing drugs that can effectively disrupt COVID-19 disease processes, contributing valuable insights into disease pathways. Traditional non
Methods UNASSIGNED
Using a novel in-silico quasi-quantum molecular simulation platform that analyzes energies and electron densities of both target proteins and candidate interruption compounds on High Performance Computing (HPC), we identified a list of FDA-approved compounds with potential to interrupt specific SARS-CoV-2 proteins. Subsequently we used 1.5M patient records from the National COVID Cohort Collaborative to create matched cohorts to refine our in-silico hits to those candidates that show statistically significant clinical effect.
Results UNASSIGNED
We identified four drugs, Metformin, Triamcinolone, Amoxicillin and Hydrochlorothiazide, that were associated with reduced mortality by 27%, 26%, 26%, and 23%, respectively, in COVID-19 patients.
Conclusions UNASSIGNED
Together, these findings provide support to our hypothesis that in-silico simulation of active compounds against SARS-CoV-2 proteins followed by statistical analysis of electronic health data results in effective therapeutics identification.

Identifiants

pubmed: 33851170
doi: 10.1101/2021.03.22.21254110
pmc: PMC8043466
pii:
doi:

Types de publication

Preprint

Langues

eng

Subventions

Organisme : NHLBI NIH HHS
ID : R01 HL133624
Pays : United States
Organisme : NCATS NIH HHS
ID : U24 TR002306
Pays : United States

Déclaration de conflit d'intérêts

CONFLICTS OF INTEREST Joy Alamgir is founder of ARIScience. Melissa Haendel is a co-founder of Pryzm Health.

Auteurs

Joy Alamgir (J)

ARIScience.

Masanao Yajima (M)

Boston University, Department of Mathematics and Statistics.

Rosa Ergas (R)

ARIScience.

Xinci Chen (X)

ARIScience.

Nicholas Hill (N)

Great Plains Tribal Leader's Health Board.

Naved Munir (N)

Caromont Regional Medical Center.

Mohsan Saeed (M)

Boston University.

Ken Gersing (K)

National Institutes of Health.

Melissa Haendel (M)

Oregon Health & Science University.

Christopher G Chute (CG)

Johns Hopkins University.

M Ruhul Abid (MR)

Brown University.

Classifications MeSH