Transcriptomic dynamics changes related to anthocyanin accumulation in the fleshy roots of carmine radish (
Anthocyanin biosynthesis
Anthocyanins
Differential expression genes (DEGs)
KEGG pathway enrichment
Radish (Raphanus sativus L.)
Journal
PeerJ
ISSN: 2167-8359
Titre abrégé: PeerJ
Pays: United States
ID NLM: 101603425
Informations de publication
Date de publication:
2021
2021
Historique:
received:
15
07
2020
accepted:
29
01
2021
entrez:
19
4
2021
pubmed:
20
4
2021
medline:
20
4
2021
Statut:
epublish
Résumé
Carmine radish is famous for containing a natural red pigment (red radish pigment). However, the expression of anthocyanin biosynthesis-related genes during the dynamic development stages of the fleshy roots in carmine radish has not been fully investigated. Here, based on HPLC quantification of anthocyanin levels from our previous study, young fleshy roots of the carmine radish "Hongxin 1" obtained at the dynamic development stages of fleshy roots (seedling stage (SS), initial expansion (IE), full expansion (FE), bolting stage (BS), initial flowering stage (IFS), full bloom stage (FBS) and podding stage (PS)) were used for RNA-Seq. Approximately 126 comodulated DEGs related to anthocyanin biosynthesis (common DEGs in the dynamic growth stages of fleshy roots in carmine radish) were identified, from which most DEGs appeared to be likely to participate in anthocyanin biosynthesis, including two transcription factors,
Identifiants
pubmed: 33868802
doi: 10.7717/peerj.10978
pii: 10978
pmc: PMC8035900
doi:
Types de publication
Journal Article
Langues
eng
Pagination
e10978Informations de copyright
© 2021 Song et al.
Déclaration de conflit d'intérêts
The authors declare that they have no competing interests.
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