Integrative Modeling of Gene Expression and Metabolic Networks of

dynamic modeling fatty acids gene expression metabolic networks plant embryo

Journal

Frontiers in plant science
ISSN: 1664-462X
Titre abrégé: Front Plant Sci
Pays: Switzerland
ID NLM: 101568200

Informations de publication

Date de publication:
2021
Historique:
received: 17 12 2020
accepted: 11 03 2021
entrez: 23 4 2021
pubmed: 24 4 2021
medline: 24 4 2021
Statut: epublish

Résumé

Fatty acids in crop seeds are a major source for both vegetable oils and industrial applications. Genetic improvement of fatty acid composition and oil content is critical to meet the current and future demands of plant-based renewable seed oils. Addressing this challenge can be approached by network modeling to capture key contributors of seed metabolism and to identify underpinning genetic targets for engineering the traits associated with seed oil composition and content. Here, we present a dynamic model, using an Ordinary Differential Equations model and integrated time-course gene expression data, to describe metabolic networks during

Identifiants

pubmed: 33889166
doi: 10.3389/fpls.2021.642938
pmc: PMC8056077
doi:

Types de publication

Journal Article

Langues

eng

Pagination

642938

Informations de copyright

Copyright © 2021 Cloutier, Xiang, Gao, Kochian, Zou, Datla and Wang.

Déclaration de conflit d'intérêts

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

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Auteurs

Mathieu Cloutier (M)

Laboratory of Bioinformatics and Systems Biology, National Research Council Canada, Montreal, QC, Canada.

Daoquan Xiang (D)

Aquatic and Crop Resource Development, National Research Council Canada, Saskatoon, SK, Canada.

Peng Gao (P)

Global Institute for Food Security, University of Saskatchewan, Saskatoon, SK, Canada.

Leon V Kochian (LV)

Global Institute for Food Security, University of Saskatchewan, Saskatoon, SK, Canada.

Jitao Zou (J)

Aquatic and Crop Resource Development, National Research Council Canada, Saskatoon, SK, Canada.

Raju Datla (R)

Aquatic and Crop Resource Development, National Research Council Canada, Saskatoon, SK, Canada.
Global Institute for Food Security, University of Saskatchewan, Saskatoon, SK, Canada.

Edwin Wang (E)

Laboratory of Bioinformatics and Systems Biology, National Research Council Canada, Montreal, QC, Canada.
Centre for Health Genomics and Informatics, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada.
Department of Biochemistry and Molecular Biology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada.

Classifications MeSH