Quickomics: exploring omics data in an intuitive, interactive and informative manner.
Journal
Bioinformatics (Oxford, England)
ISSN: 1367-4811
Titre abrégé: Bioinformatics
Pays: England
ID NLM: 9808944
Informations de publication
Date de publication:
25 Oct 2021
25 Oct 2021
Historique:
received:
11
01
2021
revised:
08
03
2021
accepted:
19
04
2021
medline:
27
4
2021
pubmed:
27
4
2021
entrez:
26
4
2021
Statut:
ppublish
Résumé
We developed Quickomics, a feature-rich R Shiny-powered tool to enable biologists to fully explore complex omics statistical analysis results and perform advanced analysis in an easy-to-use interactive interface. It covers a broad range of secondary and tertiary analytical tasks after primary analysis of omics data is completed. Each functional module is equipped with customizable options and generates both interactive and publication-ready plots to uncover biological insights from data. The modular design makes the tool extensible with ease. Researchers can experience the functionalities with their own data or demo RNA-Seq and proteomics datasets by using the app hosted at http://quickomics.bxgenomics.com and following the tutorial, https://bit.ly/3rXIyhL. The source code under GPLv3 license is provided at https://github.com/interactivereport/Quickomics for local installation. Supplementary data are available at Bioinformatics online.
Identifiants
pubmed: 33901288
pii: 6254183
doi: 10.1093/bioinformatics/btab255
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
3670-3672Subventions
Organisme : BioInfoRx, Inc
Informations de copyright
© The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.