Automated delineation of orbital abscess depicted on CT scan using deep learning.


Journal

Medical physics
ISSN: 2473-4209
Titre abrégé: Med Phys
Pays: United States
ID NLM: 0425746

Informations de publication

Date de publication:
Jul 2021
Historique:
revised: 06 04 2021
received: 30 11 2020
accepted: 19 04 2021
pubmed: 28 4 2021
medline: 30 7 2021
entrez: 27 4 2021
Statut: ppublish

Résumé

To develop and validate a deep learning algorithm to automatically detect and segment an orbital abscess depicted on computed tomography (CT). We retrospectively collected orbital CT scans acquired on 67 pediatric subjects with a confirmed orbital abscess in the setting of infectious orbital cellulitis. A context-aware convolutional neural network (CA-CNN) was developed and trained to automatically segment orbital abscess. To reduce the requirement for a large dataset, transfer learning was used by leveraging a pre-trained model for CT-based lung segmentation. An ophthalmologist manually delineated orbital abscesses depicted on the CT images. The classical U-Net and the CA-CNN models with and without transfer learning were trained and tested on the collected dataset using the 10-fold cross-validation method. Dice coefficient, Jaccard index, and Hausdorff distance were used as performance metrics to assess the agreement between the computerized and manual segmentations. The context-aware U-Net with transfer learning achieved an average Dice coefficient and Jaccard index of 0.78 ± 0.12 and 0.65 ± 0.13, which were consistently higher than the classical U-Net or the context-aware U-Net without transfer learning (P < 0.01). The average differences of the abscess between the computerized results and the experts in terms of volume and Hausdorff distance were 0.10 ± 0.11 mL and 1.94 ± 1.21 mm, respectively. The context-aware U-Net detected all orbital abscess without false positives. The deep learning solution demonstrated promising performance in detecting and segmenting orbital abscesses on CT images in strong agreement with a human observer.

Identifiants

pubmed: 33906264
doi: 10.1002/mp.14907
pmc: PMC8600964
mid: NIHMS1753833
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

3721-3729

Subventions

Organisme : NCI NIH HHS
ID : R01 CA237277
Pays : United States
Organisme : HHS | NIH | National Heart, Lung, and Blood Institute (NHLBI)
ID : R01HL096613
Organisme : Center for Strategic Scientific Initiatives, National Cancer Institute (CSSI, NCI)
ID : R01CA237277

Informations de copyright

© 2021 American Association of Physicists in Medicine.

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Auteurs

Roxana Fu (R)

Department of Ophthalmology, University of Pittsburgh, Pittsburgh, PA, 15213, USA.

Joseph K Leader (JK)

Departments of Radiology and Bioengineering, University of Pittsburgh, Pittsburgh, PA, 15213, USA.

Tejus Pradeep (T)

School of Medicine, Johns Hopkins University, Baltimore, MD, USA.

Junli Shi (J)

Departments of Radiology and Bioengineering, University of Pittsburgh, Pittsburgh, PA, 15213, USA.

Xin Meng (X)

Departments of Radiology and Bioengineering, University of Pittsburgh, Pittsburgh, PA, 15213, USA.

Yanchun Zhang (Y)

Departments of Radiology and Bioengineering, University of Pittsburgh, Pittsburgh, PA, 15213, USA.

Jiantao Pu (J)

Departments of Radiology and Bioengineering, University of Pittsburgh, Pittsburgh, PA, 15213, USA.

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