Radiomic Feature Reduction Approach to Predict Breast Cancer by Contrast-Enhanced Spectral Mammography Images.

breast cancer computer-automated diagnosis (CADx) contrast-enhanced spectral mammography (CESM) feature extraction feature reduction principal component analysis (PCA)

Journal

Diagnostics (Basel, Switzerland)
ISSN: 2075-4418
Titre abrégé: Diagnostics (Basel)
Pays: Switzerland
ID NLM: 101658402

Informations de publication

Date de publication:
10 Apr 2021
Historique:
received: 02 03 2021
revised: 07 04 2021
accepted: 08 04 2021
entrez: 30 4 2021
pubmed: 1 5 2021
medline: 1 5 2021
Statut: epublish

Résumé

Contrast-enhanced spectral mammography (CESM) is an advanced instrument for breast care that is still operator dependent. The aim of this paper is the proposal of an automated system able to discriminate benign and malignant breast lesions based on radiomic analysis. We selected a set of 58 regions of interest (ROIs) extracted from 53 patients referred to Istituto Tumori "Giovanni Paolo II" of Bari (Italy) for the breast cancer screening phase between March 2017 and June 2018. We extracted 464 features of different kinds, such as points and corners of interest, textural and statistical features from both the original ROIs and the ones obtained by a Haar decomposition and a gradient image implementation. The features data had a large dimension that can affect the process and accuracy of cancer classification. Therefore, a classification scheme for dimension reduction was needed. Specifically, a principal component analysis (PCA) dimension reduction technique that includes the calculation of variance proportion for eigenvector selection was used. For the classification method, we trained three different classifiers, that is a random forest, a naïve Bayes and a logistic regression, on each sub-set of principal components (PC) selected by a sequential forward algorithm. Moreover, we focused on the starting features that contributed most to the calculation of the related PCs, which returned the best classification models. The method obtained with the aid of the random forest classifier resulted in the best prediction of benign/malignant ROIs with median values for sensitivity and specificity of 88.37% and 100%, respectively, by using only three PCs. The features that had shown the greatest contribution to the definition of the same were almost all extracted from the LE images. Our system could represent a valid support tool for radiologists for interpreting CESM images.

Identifiants

pubmed: 33920221
pii: diagnostics11040684
doi: 10.3390/diagnostics11040684
pmc: PMC8070152
pii:
doi:

Types de publication

Journal Article

Langues

eng

Références

BMC Bioinformatics. 2020 Mar 11;21(Suppl 2):91
pubmed: 32164532
Radiol Med. 2019 Oct;124(10):1006-1017
pubmed: 31250270
Phys Med. 2019 Aug;64:1-9
pubmed: 31515007
Cancer. 2018 Jul 1;124(13):2785-2800
pubmed: 29786848
Int J Comput Assist Radiol Surg. 2019 Feb;14(2):249-257
pubmed: 30367322
Insights Imaging. 2017 Feb;8(1):11-18
pubmed: 27854006
Sensors (Basel). 2019 Aug 02;19(15):
pubmed: 31382513
AJR Am J Roentgenol. 2019 Jan;212(1):222-231
pubmed: 30383409
Eur J Radiol. 2019 Apr;113:148-152
pubmed: 30927939
Eur Radiol. 2019 Apr;29(4):1799-1808
pubmed: 30324386
Diagnostics (Basel). 2020 Sep 17;10(9):
pubmed: 32957690
CA Cancer J Clin. 2018 Nov;68(6):394-424
pubmed: 30207593
Eur J Radiol. 2018 Jan;98:207-213
pubmed: 29279165
Bioinformatics. 2007 Oct 1;23(19):2507-17
pubmed: 17720704
Cancers (Basel). 2020 Aug 21;12(9):
pubmed: 32825583
Cancer. 1950 Jan;3(1):32-5
pubmed: 15405679
Eur Radiol. 2015 Oct;25(10):2813-20
pubmed: 25813015
Biomed Res Int. 2018 May 16;2018:9032408
pubmed: 30140703
Breast Cancer Res. 2017 Sep 11;19(1):106
pubmed: 28893303
Eur Radiol. 2014 Jan;24(1):256-64
pubmed: 24048724
Front Oncol. 2021 Feb 22;11:605230
pubmed: 33692950
Artif Intell Med. 2008 Jan;42(1):67-79
pubmed: 17997084
J Clin Med. 2019 Jun 21;8(6):
pubmed: 31234363
Eur J Cancer. 2018 Nov;104:39-46
pubmed: 30316869
Radiology. 2019 Feb;290(2):305-314
pubmed: 30457482

Auteurs

Raffaella Massafra (R)

Struttura Semplice Dipartimentale di Fisica Sanitaria, I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", Viale Orazio Flacco 65, 70124 Bari, Italy.

Samantha Bove (S)

Dipartimento di Matematica, Università degli Studi di Bari, 70121 Bari, Italy.

Vito Lorusso (V)

Unità Operativa Complessa di Oncologia Medica, I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", Viale Orazio Flacco 65, 70124 Bari, Italy.

Albino Biafora (A)

Dipartimento di Economia e Finanza, Università degli Studi di Bari, 70124 Bari, Italy.

Maria Colomba Comes (MC)

Struttura Semplice Dipartimentale di Fisica Sanitaria, I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", Viale Orazio Flacco 65, 70124 Bari, Italy.

Vittorio Didonna (V)

Struttura Semplice Dipartimentale di Fisica Sanitaria, I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", Viale Orazio Flacco 65, 70124 Bari, Italy.

Sergio Diotaiuti (S)

Struttura Semplice Dipartimentale di Chirurgia, I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", Viale Orazio Flacco 65, 70124 Bari, Italy.

Annarita Fanizzi (A)

Struttura Semplice Dipartimentale di Fisica Sanitaria, I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", Viale Orazio Flacco 65, 70124 Bari, Italy.

Annalisa Nardone (A)

Unita Opertiva Complessa di Radioterapia, IRCCS Istituto Tumori "Giovanni Paolo II", 70124 Bari, Italy.

Angelo Nolasco (A)

Unità Operativa Complessa di Oncologia Medica, I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", Viale Orazio Flacco 65, 70124 Bari, Italy.

Cosmo Maurizio Ressa (CM)

Unità Operativa Complessa di Chirurgica Plastica e Ricostruttiva, I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", Viale Orazio Flacco 65, 70124 Bari, Italy.

Pasquale Tamborra (P)

Struttura Semplice Dipartimentale di Fisica Sanitaria, I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", Viale Orazio Flacco 65, 70124 Bari, Italy.

Antonella Terenzio (A)

Unità di Oncologia Medica, Università Campus Bio-Medico, 00128 Roma, Italy.

Daniele La Forgia (D)

Struttura Semplice Dipartimentale di Radiologia Senologica, I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", Viale Orazio Flacco 65, 70124 Bari, Italy.

Classifications MeSH