The Effects of In-Plane Spatial Resolution on CT-Based Radiomic Features' Stability with and without ComBat Harmonization.

harmonization image processing radiomics biomarkers reproducibility

Journal

Cancers
ISSN: 2072-6694
Titre abrégé: Cancers (Basel)
Pays: Switzerland
ID NLM: 101526829

Informations de publication

Date de publication:
13 Apr 2021
Historique:
received: 26 03 2021
revised: 07 04 2021
accepted: 08 04 2021
entrez: 30 4 2021
pubmed: 1 5 2021
medline: 1 5 2021
Statut: epublish

Résumé

While handcrafted radiomic features (HRFs) have shown promise in the field of personalized medicine, many hurdles hinder its incorporation into clinical practice, including but not limited to their sensitivity to differences in acquisition and reconstruction parameters. In this study, we evaluated the effects of differences in in-plane spatial resolution (IPR) on HRFs, using a phantom dataset (n = 14) acquired on two scanner models. Furthermore, we assessed the effects of interpolation methods (IMs), the choice of a new unified in-plane resolution (NUIR), and ComBat harmonization on the reproducibility of HRFs. The reproducibility of HRFs was significantly affected by variations in IPR, with pairwise concordant HRFs, as measured by the concordance correlation coefficient (CCC), ranging from 42% to 95%. The number of concordant HRFs (CCC > 0.9) after resampling varied depending on (i) the scanner model, (ii) the IM, and (iii) the NUIR. The number of concordant HRFs after ComBat harmonization depended on the variations between the batches harmonized. The majority of IMs resulted in a higher number of concordant HRFs compared to ComBat harmonization, and the combination of IMs and ComBat harmonization did not yield a significant benefit. Our developed framework can be used to assess the reproducibility and harmonizability of RFs.

Identifiants

pubmed: 33924382
pii: cancers13081848
doi: 10.3390/cancers13081848
pmc: PMC8103509
pii:
doi:

Types de publication

Journal Article

Langues

eng

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Auteurs

Abdalla Ibrahim (A)

The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6200 Maastricht, The Netherlands.
Department of Radiology and Nuclear Medicine, Maastricht University Medical Centre+, 6200 Maastricht, The Netherlands.
Division of Nuclear Medicine and Oncological Imaging, Department of Medical Physics, University Hospital of Liège and GIGA CRC-In Vivo Imaging, University of Liège, 4000 Liege, Belgium.
Department of Nuclear Medicine and Comprehensive Diagnostic Center Aachen (CDCA), University Hospital RWTH Aachen University, 52074 Aachen, Germany.

Turkey Refaee (T)

The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6200 Maastricht, The Netherlands.
Department of Diagnostic Radiology, Faculty of Applied Medical Sciences, Jazan University, Jazan 45142, Saudi Arabia.

Sergey Primakov (S)

The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6200 Maastricht, The Netherlands.
Department of Nuclear Medicine and Comprehensive Diagnostic Center Aachen (CDCA), University Hospital RWTH Aachen University, 52074 Aachen, Germany.

Bruno Barufaldi (B)

Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.

Raymond J Acciavatti (RJ)

Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.

Renée W Y Granzier (RWY)

Department of Surgery, GROW-School for Oncology, Maastricht University Medical Centre+, 6200 Maastricht, The Netherlands.

Roland Hustinx (R)

Division of Nuclear Medicine and Oncological Imaging, Department of Medical Physics, University Hospital of Liège and GIGA CRC-In Vivo Imaging, University of Liège, 4000 Liege, Belgium.

Felix M Mottaghy (FM)

Department of Radiology and Nuclear Medicine, Maastricht University Medical Centre+, 6200 Maastricht, The Netherlands.
Department of Nuclear Medicine and Comprehensive Diagnostic Center Aachen (CDCA), University Hospital RWTH Aachen University, 52074 Aachen, Germany.

Henry C Woodruff (HC)

The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6200 Maastricht, The Netherlands.
Department of Radiology and Nuclear Medicine, Maastricht University Medical Centre+, 6200 Maastricht, The Netherlands.

Joachim E Wildberger (JE)

Department of Radiology and Nuclear Medicine, Maastricht University Medical Centre+, 6200 Maastricht, The Netherlands.

Philippe Lambin (P)

The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6200 Maastricht, The Netherlands.
Department of Radiology and Nuclear Medicine, Maastricht University Medical Centre+, 6200 Maastricht, The Netherlands.

Andrew D A Maidment (ADA)

Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.

Classifications MeSH