Validation of Dairy Cow Bodyweight Prediction Using Traits Easily Recorded by Dairy Herd Improvement Organizations and Its Potential Improvement Using Feature Selection Algorithms.

dairy cow bodyweight dairy cows dimensionality reduction feature selection machine learning mid infrared spectra partial least square

Journal

Animals : an open access journal from MDPI
ISSN: 2076-2615
Titre abrégé: Animals (Basel)
Pays: Switzerland
ID NLM: 101635614

Informations de publication

Date de publication:
30 Apr 2021
Historique:
received: 31 03 2021
revised: 27 04 2021
accepted: 28 04 2021
entrez: 5 5 2021
pubmed: 6 5 2021
medline: 6 5 2021
Statut: epublish

Résumé

Knowing the body weight (BW) of a cow at a specific moment or measuring its changes through time is of interest for management purposes. The current work aimed to validate the feasibility of predicting BW using the day in milk, parity, milk yield, and milk mid-infrared (MIR) spectrum from a multiple-country dataset and reduce the number of predictors to limit the risk of over-fitting and potentially improve its accuracy. The BW modeling procedure involved feature selections and herd-independent validation in identifying the most interesting subsets of predictors and then external validation of the models. From 1849 records collected in 9 herds from 360 Holstein cows, the best performing models achieved a root mean square error (RMSE) for the herd-independent validation between 52 ± 2.34 kg to 56 ± 3.16 kg, including from 5 to 62 predictors. Among these models, three performed remarkably well in external validation using an independent dataset (N = 4067), resulting in RMSE ranging from 52 to 56 kg. The results suggest that multiple optimal BW predictive models coexist due to the high correlations between adjacent spectral points.

Identifiants

pubmed: 33946238
pii: ani11051288
doi: 10.3390/ani11051288
pmc: PMC8145206
pii:
doi:

Types de publication

Journal Article

Langues

eng

Subventions

Organisme : National Fund for the Scientific Research (F.R.S-FNRS)
ID : T.0221.19

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Auteurs

Anthony Tedde (A)

AGROBIOCHEM Department, Research and Teaching Centre (TERRA), Gembloux Agro-Bio Tech, University of Liège, 5030 Gembloux, Belgium.
National Funds for Scientific Research, 1000 Brussels, Belgium.

Clément Grelet (C)

Walloon Agricultural Research Center (CRA-W), 5030 Gembloux, Belgium.

Phuong N Ho (PN)

Agriculture Victoria Research, Centre for AgriBioscience, AgriBio, Bundoora, VIC 3083, Australia.

Jennie E Pryce (JE)

Agriculture Victoria Research, Centre for AgriBioscience, AgriBio, Bundoora, VIC 3083, Australia.
School of Applied Systems Biology, La Trobe University, 5 Ring Road, Bundoora, VIC 3083, Australia.

Dagnachew Hailemariam (D)

Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB T6G 2P5, Canada.

Zhiquan Wang (Z)

Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB T6G 2P5, Canada.

Graham Plastow (G)

Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB T6G 2P5, Canada.

Nicolas Gengler (N)

AGROBIOCHEM Department, Research and Teaching Centre (TERRA), Gembloux Agro-Bio Tech, University of Liège, 5030 Gembloux, Belgium.

Yves Brostaux (Y)

AGROBIOCHEM Department, Research and Teaching Centre (TERRA), Gembloux Agro-Bio Tech, University of Liège, 5030 Gembloux, Belgium.

Eric Froidmont (E)

Walloon Agricultural Research Center (CRA-W), 5030 Gembloux, Belgium.

Frédéric Dehareng (F)

Walloon Agricultural Research Center (CRA-W), 5030 Gembloux, Belgium.

Carlo Bertozzi (C)

Walloon Breeding Association, 5590 Ciney, Belgium.

Mark A Crowe (MA)

UCD School of Veterinary Medicine, University College Dublin, D04 V1W8 Dublin, Ireland.

Isabelle Dufrasne (I)

Faculty of Veterinary Medicine, University of Liège, Quartier Vallée 2, 4000 Liège, Belgium.

Hélène Soyeurt (H)

AGROBIOCHEM Department, Research and Teaching Centre (TERRA), Gembloux Agro-Bio Tech, University of Liège, 5030 Gembloux, Belgium.

Classifications MeSH