ToRQuEMaDA: tool for retrieving queried Eubacteria, metadata and dereplicating assemblies.
Alignment-free methods
Dereplication
Genome quality
Genome selection
Metagenomics
NCBI RefSeq
Phylogenomics
Prokaryotes
Singularity
Journal
PeerJ
ISSN: 2167-8359
Titre abrégé: PeerJ
Pays: United States
ID NLM: 101603425
Informations de publication
Date de publication:
2021
2021
Historique:
received:
24
11
2020
accepted:
04
04
2021
entrez:
17
5
2021
pubmed:
18
5
2021
medline:
18
5
2021
Statut:
epublish
Résumé
TQMD is a tool for high-performance computing clusters which downloads, stores and produces lists of dereplicated prokaryotic genomes. It has been developed to counter the ever-growing number of prokaryotic genomes and their uneven taxonomic distribution. It is based on word-based alignment-free methods (
Identifiants
pubmed: 33996287
doi: 10.7717/peerj.11348
pii: 11348
pmc: PMC8106394
doi:
Banques de données
figshare
['10.6084/m9.figshare.13238936.v2']
Types de publication
Journal Article
Langues
eng
Pagination
e11348Informations de copyright
©2021 Léonard et al.
Déclaration de conflit d'intérêts
The authors declare there are no competing interests.
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