A simple, inexpensive and multi-scale 3-D fluorescent test sample for optical sectioning microscopies.
calibration
fluorescence
metrology
multi-modal
quality control
standardization
Journal
Microscopy research and technique
ISSN: 1097-0029
Titre abrégé: Microsc Res Tech
Pays: United States
ID NLM: 9203012
Informations de publication
Date de publication:
Nov 2021
Nov 2021
Historique:
revised:
05
04
2021
received:
14
01
2021
accepted:
27
04
2021
pubmed:
20
5
2021
medline:
21
10
2021
entrez:
19
5
2021
Statut:
ppublish
Résumé
Fluorescence standards allow for quality control and for the comparison of data sets across instruments and laboratories in applications of quantitative fluorescence. For example, users of microscopy core facilities can expect a homogenous and time-invariant illumination and an uniform detection sensitivity, which are prerequisites for imaging analysis, tracking or fluorimetric pH or Ca
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
2625-2635Subventions
Organisme : Agence Nationale de la Recherche
ID : ANR-10-INSB-04
Organisme : CNRS-LIA
ID : imaginano
Organisme : FranceBioImaging
ID : FBI-large-scale national infrastructure initiative
Organisme : H2020 Eureka
ID : Nanoscale
Organisme : Israel Science Foundation
ID : 1231/19
Informations de copyright
© 2021 Wiley Periodicals LLC.
Références
Agard, D. A., Hiraoka, Y., Shaw, P., & Sedat, J. W. (1989). Fluorescence microscopy in three dimensions. Methods in Cell Biology, 30, 353-377.
Alexia, F., Schleicher, K. D., Nikolaus, E., Wolf, H., & Oliver, B. (2019). Using the NoiSee workflow to measure signal-to-noise ratios of confocal microscopes. Scientific Reports (Nature Publisher Group), 9(1), 1165.
Barentine, A. E., Schroeder, L. K., Graff, M., Baddeley, D., & Bewersdorf, J. (2018). Simultaneously measuring image features and resolution in live-cell STED images. Biophysical Journal, 115(6), 951-956.
Bort, G., Gallavardin, T., Ogden, D., & Dalko, P. I. (2013). From one-photon to two-photon probes: “caged” compounds, actuators, and photoswitches. Angewandte Chemie International Edition, 52(17), 4526-4537.
Brown, C. M., Reilly, A., & Cole, R. W. (2015). A quantitative measure of field illumination. Journal of Biomolecular Techniques: JBT, 26(2), 37-44.
Corbett, A. D., Shaw, M., Yacoot, A., Jefferson, A., Schermelleh, L., Wilson, T., … Salter, P. S. (2018). Microscope calibration using laser written fluorescence. Optics Express, 26(17), 21887-21900.
De Borba, E., Amaral, C., Politi, M., Villalobos, R., & Baptista, M. (2000). Photophysical and photochemical properties of pyranine/methyl viologen complexes in solution and in supramolecular aggregates: A switchable complex. Langmuir, 16(14), 5900-5907.
Deagle, R. C., Wee, T.-L. E., & Brown, C. M. (2017). Reproducibility in light microscopy: Maintenance, standards and SOPs. The International Journal of Biochemistry & Cell Biology, 89, 120-124.
Denk, W., Strickler, J. H., & Webb, W. W. (1990). Two-photon laser scanning fluorescence microscopy. Science, 248(4951), 73-76.
Diaspro, A. (2002). Confocal and two-photon microscopy: Foundations, applications, and advances. New York: Wiley-Liss.
Dieterlen, A., Xu, C., Gramain, M.-P., Haeberlé, O., Colicchio, B., Cudel, C., … Jeandidier, É. (2002). Validation of image processing tools for 3-D fluorescence microscopy. Comptes Rendus Biologies, 325(4), 327-334.
Dodt, H.-U., Leischner, U., Schierloh, A., Jährling, N., Mauch, C. P., Deininger, K., … Becker, K. (2007). Ultramicroscopy: Three-dimensional visualization of neuronal networks in the whole mouse brain. Nature Methods, 4(4), 331-336.
Feldhaus, C., Panzera, A., & Palmisano, R. (2019). Evaluation of highlighter pens as cheap and cheerful samples for microscope calibration and performance testing. Conference presentation/poster. Focus on microscopy (FOM), 2019, London. Retrieved from https://webdav.tuebingen.mpg.de/LM/FOM2019/.
Hiemann, R., Hilger, N., Sack, U., & Weigert, M. (2006). Objective quality evaluation of fluorescence images to optimize automatic image acquisition. Cytometry Part A: The Journal of the International Society for Analytical Cytology, 69(3), 182-184.
Hillman, E. M., Voleti, V., Li, W., & Yu, H. (2019). Light-sheet microscopy in neuroscience. Annual Review of Neuroscience, 42, 295-313.
Huber, D., Keller, M., & Robert, D. (2001). 3D light scanning macrography. Journal of Microscopy, 203(2), 208-213.
Huisken, J., Swoger, J., Del Bene, F., Wittbrodt, J., & Stelzer, E. H. (2004). Optical sectioning deep inside live embryos by selective plane illumination microscopy. Science, 305(5686), 1007-1009.
Keller, P. J., & Dodt, H.-U. (2012). Light sheet microscopy of living or cleared specimens. Current Opinion in Neurobiology, 22(1), 138-143.
Kim, G., Lee, S., Shin, S., & Park, Y. (2018). Three-dimensional label-free imaging and analysis of Pinus pollen grains using optical diffraction tomography. Scientific Reports, 8(1), 1-8.
Kirkby, P. A., Nadella, K. N. S., & Silver, R. A. (2010). A compact acousto-optic lens for 2D and 3D femtosecond based 2-photon microscopy. Optics Express, 18(13), 13720-13744.
Kiskin, N. I., Chillingworth, R., McCray, J. A., Piston, D., & Ogden, D. (2002). The efficiency of two-photon photolysis of a “caged” fluorophore, o-1-(2-nitrophenyl) ethylpyranine, in relation to photodamage of synaptic terminals. European Biophysics Journal, 30(8), 588-604.
Legenzov, E. A., Dirda, N. D., Hagen, B. M., & Kao, J. P. (2015). Synthesis and characterization of 8-O-carboxymethylpyranine (CM-pyranine) as a bright, violet-emitting, fluid-phase fluorescent marker in cell biology. PLoS One, 10(7), e0133518.
Masters, B. R. (2020). Richard Zsigmondy and Henry Siedentopf's Ultramicroscope. Superresolution optical microscopy (pp. 165-172). Heidelberg/Berlin/New York: Springer.
McNally, J. G., Karpova, T., Cooper, J., & Conchello, J. A. (1999). Three-dimensional imaging by deconvolution microscopy. Methods, 19(3), 373-385.
Model, M. A., & Burkhardt, J. K. (2001). A standard for calibration and shading correction of a fluorescence microscope. Cytometry: The Journal of the International Society for Analytical Cytology, 44(4), 309-316.
Müller, C. B., & Enderlein, J. (2010). Image scanning microscopy. Physical Review Letters, 104(19), 198101.
Murray, J. M., Appleton, P. L., Swedlow, J. R., & Waters, J. C. (2007). Evaluating performance in three-dimensional fluorescence microscopy. Journal of Microscopy, 228(3), 390-405.
Nadrigny, F., Rivals, I., Hirrlinger, P. G., Koulakoff, A., Personnaz, L., Vernet, M., … Giaume, C. (2006). Detecting fluorescent protein expression and co-localisation on single secretory vesicles with linear spectral unmixing. European Biophysics Journal, 35(6), 533-547.
Neher, E. (1995). The use of fura-2 for estimating Ca buffers and Ca fluxes. Neuropharmacology, 34(11), 1423-1442.
Oheim, M., Salomon, A., Weissman, A., Brunstein, M., & Becherer, U. (2019). Calibrating evanescent-wave penetration depths for biological TIRF microscopy. Biophysical Journal, 117(5), 795-809.
Paddock, S. W. (1999). Confocal microscopy: Methods and protocols. New York/Heidelberg/Dordrecht/London: Springer Science & Business Media.
Pastirk, I., Cruz, J. M. D., Walowicz, K. A., Lozovoy, V. V., & Dantus, M. (2003). Selective two-photon microscopy with shaped femtosecond pulses. Optics Express, 11(14), 1695-1701.
Pawley, J. (2006). Handbook of biological confocal microscopy. New York/Heidelberg/Dordrecht/London: Springer Science & Business Media.
Potter, S. M. (1996). Vital imaging: Two photons are better than one. Current Biology, 6(12), 1595-1598.
Rakotoson, I., Delhomme, B., Djian, P., Deeg, A., Brunstein, M., Seebacher, C., … Oheim, M. (2019). Fast 3-D imaging of brain organoids with a new single-objective planar-illumination two-photon microscope. Frontiers in Neuroanatomy, 13, 77.
Resch-Genger, U., Hoffmann, K., Nietfeld, W., Engel, A., Neukammer, J. A., Nitschke, R., … Macdonald, R. (2005). How to improve quality assurance in fluorometry: Fluorescence-inherent sources of error and suited fluorescence standards. Journal of Fluorescence, 15(3), 337-362.
Royon, A., & Converset, N. (2017). Quality control of fluorescence imaging systems: A new tool for performance assessment and monitoring. Optik & Photonik, 12(2), 22-25.
Saha, T., Sengupta, A., Hazra, P., & Talukdar, P. (2014). In vitro sensing of Cu+ through a green fluorescence rise of pyranine. Photochemical & Photobiological Sciences, 13(10), 1427-1433.
Schindelin, J., Arganda-Carreras, I., Frise, E., Kaynig, V., Longair, M., Pietzsch, T., … Schmid, B. (2012). Fiji: An open-source platform for biological-image analysis. Nature Methods, 9(7), 676-682.
Shin, Y., Kim, D., & Kwon, H. S. (2018). Oblique scanning 2-photon light-sheet fluorescence microscopy for rapid volumetric imaging. Journal of Biophotonics, 11(5), e201700270.
Siedentopf, H., & Zsigmondy, R. (1902). Uber sichtbarmachung und größenbestimmung ultramikoskopischer teilchen, mit besonderer anwendung auf goldrubingläser. Annalen der Physik, 315(1), 1-39.
Siegel, N., & Brooker, G. (2014). Improved axial resolution of FINCH fluorescence microscopy when combined with spinning disk confocal microscopy. Optics Express, 22(19), 22298-22307.
Sivaguru, M., Mander, L., Fried, G., & Punyasena, S. W. (2012). Capturing the surface texture and shape of pollen: A comparison of microscopy techniques. PLoS One, 7(6), e39129.
Sivaguru, M., Urban, M. A., Fried, G., Wesseln, C. J., Mander, L., & Punyasena, S. W. (2018). Comparative performance of airyscan and structured illumination superresolution microscopy in the study of the surface texture and 3D shape of pollen. Microscopy Research and Technique, 81(2), 101-114.
Swedlow, J. R. (2007). Quantitative fluorescence microscopy and image deconvolution. Methods in Cell Biology, 81, 447-465.
Taniguchi, M., & Lindsey, J. S. (2018). Database of absorption and fluorescence spectra of >300 common compounds for use in photochem CAD. Photochemistry and Photobiology, 94(2), 290-327.
Thériault, G., Cottet, M., Castonguay, A., McCarthy, N., & De Koninck, Y. (2014). Extended two-photon microscopy in live samples with Bessel beams: Steadier focus, faster volume scans, and simpler stereoscopic imaging. Frontiers in Cellular Neuroscience, 8, 139.
Thomas, J. V., Brimijoin, M. R., Neault, T. R., & Brubaker, R. F. (1990). The fluorescent indicator pyranine is suitable for measuring stromal and cameral pH in vivo. Experimental Eye Research, 50(3), 241-249.
van't Hoff, M., Reuter, M., Dryden, D. T., & Oheim, M. (2009). Screening by imaging: Scaling up single-DNA-molecule analysis with a novel parabolic VA-TIRF reflector and noise-reduction techniques. Physical Chemistry Chemical Physics, 11(35), 7713-7720.
Vitha, S., Bryant, V. M., Zwa, A., & Holzenburg, A. (2009). 3D confocal imaging of pollen. Microscopy and Microanalysis, 15(S2), 622-623.
Voie, A. H., Burns, D., & Spelman, F. (1993). Orthogonal-plane fluorescence optical sectioning: Three-dimensional imaging of macroscopic biological specimens. Journal of Microscopy, 170(3), 229-236.
Wan, Y., McDole, K., & Keller, P. J. (2019). Light-sheet microscopy and its potential for understanding developmental processes. Annual Review of Cell and Developmental Biology, 35, 655-681.
Waters, J. C. (2009). Accuracy and precision in quantitative fluorescence microscopy. Elsevier, Amsterdam: The Rockefeller University Press.
Waters, J. C., & Swedlow, J. R. (2007). Interpreting fluorescence microscopy images and measurements. In D. Zuk (Ed.), Evaluating techniques in biochemical research (pp. 37-42). Cambridge, MA: Cell Press.
Waters, J. C., & Wittmann, T. (2014). Concepts in quantitative fluorescence microscopy. Methods in Cell Biology, Elsevier, Amsterdam, 123, 1-18.
Weissman, A., Klimovsky, H., Harel, D., Ron, R., Oheim, M., & Salomon, A. (2020). Fabrication of dipole-aligned thin films of Porphyrin J-aggregates over large surfaces. Langmuir, 36(4), 844-851.
Zhang, B., Zerubia, J., & Olivo-Marin, J.-C. (2007). Gaussian approximations of fluorescence microscope point-spread function models. Applied Optics, 46(10), 1819-1829.