Novel Autosegmentation Spatial Similarity Metrics Capture the Time Required to Correct Segmentations Better Than Traditional Metrics in a Thoracic Cavity Segmentation Workflow.

Image segmentation “AI artificial intelligence” [MeSH] “Clinical informatics” [MeSH] “Computer-assisted image analysis” [MeSH] “Medical imaging” [MeSH]

Journal

Journal of digital imaging
ISSN: 1618-727X
Titre abrégé: J Digit Imaging
Pays: United States
ID NLM: 9100529

Informations de publication

Date de publication:
06 2021
Historique:
received: 19 05 2020
accepted: 04 05 2021
revised: 28 03 2021
pubmed: 25 5 2021
medline: 28 9 2021
entrez: 24 5 2021
Statut: ppublish

Résumé

Automated segmentation templates can save clinicians time compared to de novo segmentation but may still take substantial time to review and correct. It has not been thoroughly investigated which automated segmentation-corrected segmentation similarity metrics best predict clinician correction time. Bilateral thoracic cavity volumes in 329 CT scans were segmented by a UNet-inspired deep learning segmentation tool and subsequently corrected by a fourth-year medical student. Eight spatial similarity metrics were calculated between the automated and corrected segmentations and associated with correction times using Spearman's rank correlation coefficients. Nine clinical variables were also associated with metrics and correction times using Spearman's rank correlation coefficients or Mann-Whitney U tests. The added path length, false negative path length, and surface Dice similarity coefficient correlated better with correction time than traditional metrics, including the popular volumetric Dice similarity coefficient (respectively ρ = 0.69, ρ = 0.65, ρ =  - 0.48 versus ρ =  - 0.25; correlation p values < 0.001). Clinical variables poorly represented in the autosegmentation tool's training data were often associated with decreased accuracy but not necessarily with prolonged correction time. Metrics used to develop and evaluate autosegmentation tools should correlate with clinical time saved. To our knowledge, this is only the second investigation of which metrics correlate with time saved. Validation of our findings is indicated in other anatomic sites and clinical workflows. Novel spatial similarity metrics may be preferable to traditional metrics for developing and evaluating autosegmentation tools that are intended to save clinicians time.

Identifiants

pubmed: 34027588
doi: 10.1007/s10278-021-00460-3
pii: 10.1007/s10278-021-00460-3
pmc: PMC8329111
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

541-553

Subventions

Organisme : NCI NIH HHS
ID : P30CA016672
Pays : United States
Organisme : NIH HHS
ID : UL1TR003167
Pays : United States
Organisme : NIDCR NIH HHS
ID : 1R01DE025248
Pays : United States
Organisme : NIDCR NIH HHS
ID : R56DE025248
Pays : United States
Organisme : NCI NIH HHS
ID : R01 CA214825
Pays : United States
Organisme : NIBIB NIH HHS
ID : R25 EB025787
Pays : United States
Organisme : NCI NIH HHS
ID : P50CA097007
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR003167
Pays : United States
Organisme : NCI NIH HHS
ID : 1R01CA214825
Pays : United States
Organisme : NCI NIH HHS
ID : 1R01CA218148
Pays : United States
Organisme : NIDCR NIH HHS
ID : R56 DE025248
Pays : United States
Organisme : NIBIB NIH HHS
ID : R25EB025787-01
Pays : United States
Organisme : NIDCR NIH HHS
ID : R01 DE028290
Pays : United States

Informations de copyright

© 2021. The Author(s).

Références

Adv Radiat Oncol. 2018 Oct 18;4(1):201-209
pubmed: 30706029
Front Neurosci. 2019 Jan 09;12:967
pubmed: 30686966
Med Image Anal. 2018 Dec;50:54-64
pubmed: 30208356
Nat Commun. 2014 Jun 03;5:4006
pubmed: 24892406
Med Eng Phys. 2018 Jan;51:6-16
pubmed: 29096986
Radiology. 2019 Jun;291(3):781-791
pubmed: 30990384
Med Phys. 2018 Nov;45(11):5129-5137
pubmed: 30269345
Sci Rep. 2017 Jul 13;7(1):5301
pubmed: 28706185
Radiother Oncol. 2014 Sep;112(3):321-5
pubmed: 25216572
Asia Pac J Ophthalmol (Phila). 2019 Mar-Apr;8(2):187-194
pubmed: 30997756
J Med Imaging Radiat Oncol. 2016 Jun;60(3):393-406
pubmed: 27170216
Phys Med. 2018 Jun;50:13-19
pubmed: 29891089
Semin Nucl Med. 2019 Sep;49(5):438-449
pubmed: 31470936
Phys Imaging Radiat Oncol. 2019 Dec 17;13:1-6
pubmed: 33458300
Med Phys. 2018 Nov;45(11):5105-5115
pubmed: 30229951
Radiother Oncol. 2005 Dec;77(3):241-6
pubmed: 16298002
Radiother Oncol. 2011 Mar;98(3):373-7
pubmed: 21269714
J Neurosci Methods. 2016 May 1;264:47-56
pubmed: 26945974
Radiat Oncol. 2016 Dec 3;11(1):157
pubmed: 27912764
Nature. 2015 May 28;521(7553):436-44
pubmed: 26017442
Med Biol Eng Comput. 2019 May;57(5):1015-1027
pubmed: 30520006
Int J Radiat Oncol Biol Phys. 2018 Jun 1;101(2):468-478
pubmed: 29559291
J Appl Clin Med Phys. 2016 Jul 08;17(4):146-154
pubmed: 27455480
Front Neuroinform. 2014 Feb 21;8:14
pubmed: 24600388
Radiat Oncol J. 2019 Jun;37(2):134-142
pubmed: 31266293
Med Phys. 2017 Feb;44(2):547-557
pubmed: 28205307
Neuroimage Clin. 2014 Mar 21;4:540-8
pubmed: 24818079
Oncotarget. 2016 Jul 5;7(27):42579-42584
pubmed: 27302924
Med Phys. 2019 Nov;46(11):5086-5097
pubmed: 31505046
Radiology. 2020 May;295(2):328-338
pubmed: 32154773
Int J Radiat Oncol Biol Phys. 2016 Mar 15;94(4):824-31
pubmed: 26972655
Med Phys. 2019 Feb;46(2):576-589
pubmed: 30480818
Ann Biomed Eng. 2018 Oct;46(10):1450-1464
pubmed: 30014286
J Magn Reson Imaging. 2008 Apr;27(4):785-92
pubmed: 18302202
Phys Med Biol. 2015 Jul 07;60(13):5199-209
pubmed: 26083863
Radiother Oncol. 2016 Nov;121(2):169-179
pubmed: 27729166
Radiother Oncol. 2015 Jun;115(3):407-11
pubmed: 26025546
BMC Med Imaging. 2015 Aug 12;15:29
pubmed: 26263899
Med Image Anal. 2018 Apr;45:94-107
pubmed: 29427897
Radiother Oncol. 2019 Aug;137:9-15
pubmed: 31048235
Med Phys. 2018 Oct;45(10):4558-4567
pubmed: 30136285
Phys Med Biol. 2019 Aug 14;64(16):165008
pubmed: 31272095
J Thorac Oncol. 2015 Apr;10(4):577-85
pubmed: 25514807
Radiat Oncol. 2014 Aug 03;9:173
pubmed: 25086641
Ophthalmology. 2016 Aug;123(8):1731-1736
pubmed: 27206840
Front Oncol. 2019 Sep 30;9:983
pubmed: 31632914
Stroke. 2019 Nov;50(11):3093-3100
pubmed: 31547796
Med Phys. 2020 Nov;47(11):5941-5952
pubmed: 32749075
Radiother Oncol. 2019 Sep;138:68-74
pubmed: 31146073
JAMA Facial Plast Surg. 2018 Sep 1;20(5):373-380
pubmed: 29710318
PLoS One. 2020 Feb 10;15(2):e0227791
pubmed: 32040514
Radiother Oncol. 2020 Apr;145:1-6
pubmed: 31869676
Front Oncol. 2019 Nov 13;9:1192
pubmed: 31799181
Sci Rep. 2018 Jun 28;8(1):9802
pubmed: 29955159
Med Phys. 2018 Oct;45(10):4568-4581
pubmed: 30144101
Neuroimage. 2006 Jul 1;31(3):1116-28
pubmed: 16545965
Annu Int Conf IEEE Eng Med Biol Soc. 2019 Jul;2019:978-981
pubmed: 31946057
Strahlenther Onkol. 2012 Sep;188(9):807-15
pubmed: 22669393
Clin Oncol (R Coll Radiol). 2018 Nov;30(11):711-719
pubmed: 30201276
Radiology. 2020 May;295(2):339-341
pubmed: 32159452
Med Phys. 2017 Dec;44(12):6377-6389
pubmed: 28963779

Auteurs

Kendall J Kiser (KJ)

Department of Radiation Oncology, Washington University School of Medicine in St. Louis, St. Louis, MO, USA. K.j.kiser@wustl.edu.

Arko Barman (A)

Center for Precision Health, UT Health School of Biomedical Informatics, Houston, TX, USA.

Sonja Stieb (S)

Department of Radiation Oncology, University of Texas MD Anderson Cancer Center, Houston, TX, USA.

Clifton D Fuller (CD)

Department of Radiation Oncology, University of Texas MD Anderson Cancer Center, Houston, TX, USA.

Luca Giancardo (L)

Center for Precision Health, UT Health School of Biomedical Informatics, Houston, TX, USA.

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Classifications MeSH