An international genome-wide meta-analysis of primary biliary cholangitis: Novel risk loci and candidate drugs.
ALSPAC
ERN RARE-LIVER
Genomic co-localization
Network-based in silico drug efficacy screening
UK-PBC
Journal
Journal of hepatology
ISSN: 1600-0641
Titre abrégé: J Hepatol
Pays: Netherlands
ID NLM: 8503886
Informations de publication
Date de publication:
09 2021
09 2021
Historique:
received:
25
08
2020
revised:
11
03
2021
accepted:
07
04
2021
pubmed:
26
5
2021
medline:
10
2
2022
entrez:
25
5
2021
Statut:
ppublish
Résumé
Primary biliary cholangitis (PBC) is a chronic liver disease in which autoimmune destruction of the small intrahepatic bile ducts eventually leads to cirrhosis. Many patients have inadequate response to licensed medications, motivating the search for novel therapies. Previous genome-wide association studies (GWAS) and meta-analyses (GWMA) of PBC have identified numerous risk loci for this condition, providing insight into its aetiology. We undertook the largest GWMA of PBC to date, aiming to identify additional risk loci and prioritise candidate genes for in silico drug efficacy screening. We combined new and existing genotype data for 10,516 cases and 20,772 controls from 5 European and 2 East Asian cohorts. We identified 56 genome-wide significant loci (20 novel) including 46 in European, 13 in Asian, and 41 in combined cohorts; and a 57 This study has identified additional risk loci for PBC, provided a hierarchy of agents that could be trialled in this condition, and emphasised the value of genetic and genomic approaches to drug discovery in complex disorders. Primary biliary cholangitis (PBC) is a chronic liver disease that eventually leads to cirrhosis. In this study, we analysed genetic information from 10,516 people with PBC and 20,772 healthy individuals recruited in Canada, China, Italy, Japan, the UK, or the USA. We identified several genetic regions associated with PBC. Each of these regions contains several genes. For each region, we used diverse sources of evidence to help us choose the gene most likely to be involved in causing PBC. We used these 'candidate genes' to help us identify medications that are currently used for treatment of other conditions, which might also be useful for treatment of PBC.
Sections du résumé
BACKGROUNDS & AIMS
Primary biliary cholangitis (PBC) is a chronic liver disease in which autoimmune destruction of the small intrahepatic bile ducts eventually leads to cirrhosis. Many patients have inadequate response to licensed medications, motivating the search for novel therapies. Previous genome-wide association studies (GWAS) and meta-analyses (GWMA) of PBC have identified numerous risk loci for this condition, providing insight into its aetiology. We undertook the largest GWMA of PBC to date, aiming to identify additional risk loci and prioritise candidate genes for in silico drug efficacy screening.
METHODS
We combined new and existing genotype data for 10,516 cases and 20,772 controls from 5 European and 2 East Asian cohorts.
RESULTS
We identified 56 genome-wide significant loci (20 novel) including 46 in European, 13 in Asian, and 41 in combined cohorts; and a 57
CONCLUSIONS
This study has identified additional risk loci for PBC, provided a hierarchy of agents that could be trialled in this condition, and emphasised the value of genetic and genomic approaches to drug discovery in complex disorders.
LAY SUMMARY
Primary biliary cholangitis (PBC) is a chronic liver disease that eventually leads to cirrhosis. In this study, we analysed genetic information from 10,516 people with PBC and 20,772 healthy individuals recruited in Canada, China, Italy, Japan, the UK, or the USA. We identified several genetic regions associated with PBC. Each of these regions contains several genes. For each region, we used diverse sources of evidence to help us choose the gene most likely to be involved in causing PBC. We used these 'candidate genes' to help us identify medications that are currently used for treatment of other conditions, which might also be useful for treatment of PBC.
Identifiants
pubmed: 34033851
pii: S0168-8278(21)00334-2
doi: 10.1016/j.jhep.2021.04.055
pmc: PMC8811537
pii:
doi:
Types de publication
Journal Article
Meta-Analysis
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Systematic Review
Langues
eng
Sous-ensembles de citation
IM
Pagination
572-581Subventions
Organisme : Medical Research Council
ID : MC_PC_19009
Pays : United Kingdom
Organisme : Department of Health
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/L001489/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_PC_15018
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BBI025751/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : G9815508
Pays : United Kingdom
Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/I025263/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : 217065/Z/19/Z
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 102858/Z/13/Z
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/M011186/1
Pays : United Kingdom
Organisme : Wellcome Trust
ID : WT088806
Pays : United Kingdom
Investigateurs
Katherine A Siminovitch
(KA)
Gideon M Hirschfield
(GM)
Andrew Mason
(A)
Catherine Vincent
(C)
Gang Xie
(G)
Jinyi Zhang
(J)
Ruqi Tang
(R)
Xiong Ma
(X)
Zhiqiang Li
(Z)
Yongyong Shi
(Y)
Andrea Affronti
(A)
Piero L Almasio
(PL)
Domenico Alvaro
(D)
Pietro Andreone
(P)
Angelo Andriulli
(A)
Francesco Azzaroli
(F)
Pier Maria Battezzati
(PM)
Antonio Benedetti
(A)
MariaConsiglia Bragazzi
(M)
Maurizia Brunetto
(M)
Savino Bruno
(S)
Vincenza Calvaruso
(V)
Vincenzo Cardinale
(V)
Giovanni Casella
(G)
Nora Cazzagon
(N)
Antonio Ciaccio
(A)
Barbara Coco
(B)
Agostino Colli
(A)
Guido Colloredo
(G)
Massimo Colombo
(M)
Silvia Colombo
(S)
Laura Cristoferi
(L)
Carmela Cursaro
(C)
Lory Saveria Crocè
(LS)
Andrea Crosignani
(A)
Daphne D'Amato
(D)
Francesca Donato
(F)
Gianfranco Elia
(G)
Luca Fabris
(L)
Stefano Fagiuoli
(S)
Carlo Ferrari
(C)
Annarosa Floreani
(A)
Andrea Galli
(A)
Edoardo Giannini
(E)
Ignazio Grattagliano
(I)
Pietro Lampertico
(P)
Ana Lleo
(A)
Federica Malinverno
(F)
Clara Mancuso
(C)
Fabio Marra
(F)
Marco Marzioni
(M)
Sara Massironi
(S)
Alberto Mattalia
(A)
Luca Miele
(L)
Chiara Milani
(C)
Lorenzo Morini
(L)
Filomena Morisco
(F)
Luigi Muratori
(L)
Paolo Muratori
(P)
Grazia A Niro
(GA)
Sarah O'Donnell
(S)
Antonio Picciotto
(A)
Piero Portincasa
(P)
Cristina Rigamonti
(C)
Vincenzo Ronca
(V)
Floriano Rosina
(F)
Giancarlo Spinzi
(G)
Mario Strazzabosco
(M)
Mirko Tarocchi
(M)
Claudio Tiribelli
(C)
Pierluigi Toniutto
(P)
Luca Valenti
(L)
Maria Vinci
(M)
Massimo Zuin
(M)
Hitomi Nakamura
(H)
Seigo Abiru
(S)
Shinya Nagaoka
(S)
Atsumasa Komori
(A)
Hiroshi Yatsuhashi
(H)
Hiromi Ishibashi
(H)
Masahiro Ito
(M)
Kiyoshi Migita
(K)
Hiromasa Ohira
(H)
Shinji Katsushima
(S)
Atsushi Naganuma
(A)
Kazuhiro Sugi
(K)
Tatsuji Komatsu
(T)
Tomohiko Mannami
(T)
Kouki Matsushita
(K)
Kaname Yoshizawa
(K)
Fujio Makita
(F)
Toshiki Nikami
(T)
Hideo Nishimura
(H)
Hiroshi Kouno
(H)
Hirotaka Kouno
(H)
Hajime Ota
(H)
Takuya Komura
(T)
Yoko Nakamura
(Y)
Masaaki Shimada
(M)
Noboru Hirashima
(N)
Toshiki Komeda
(T)
Keisuke Ario
(K)
Makoto Nakamuta
(M)
Tsutomu Yamashita
(T)
Kiyoshi Furuta
(K)
Masahiro Kikuchi
(M)
Noriaki Naeshiro
(N)
Hironao Takahashi
(H)
Yutaka Mano
(Y)
Seiji Tsunematsu
(S)
Iwao Yabuuchi
(I)
Yusuke Shimada
(Y)
Kazuhiko Yamauchi
(K)
Rie Sugimoto
(R)
Hironori Sakai
(H)
Eiji Mita
(E)
Masaharu Koda
(M)
Satoru Tsuruta
(S)
Hiroshi Kamitsukasa
(H)
Takeaki Sato
(T)
Naohiko Masaki
(N)
Tatsuro Kobata
(T)
Nobuyoshi Fukushima
(N)
Yukio Ohara
(Y)
Toyokichi Muro
(T)
Eiichi Takesaki
(E)
Hitoshi Takaki
(H)
Tetsuo Yamamoto
(T)
Michio Kato
(M)
Yuko Nagaoki
(Y)
Shigeki Hayashi
(S)
Jinya Ishida
(J)
Yukio Watanabe
(Y)
Masakazu Kobayashi
(M)
Michiaki Koga
(M)
Takeo Saoshiro
(T)
Michiyasu Yagura
(M)
Keisuke Hirata
(K)
Atsushu Tanaka
(A)
Hajime Takikawa
(H)
Mikio Zeniya
(M)
Masanori Abe
(M)
Morikazu Onji
(M)
Shuichi Kaneko
(S)
Masao Honda
(M)
Kuniaki Arai
(K)
Teruko Arinaga-Hino
(T)
Etsuko Hashimoto
(E)
Makiko Taniai
(M)
Takeji Umemura
(T)
Satoru Joshita
(S)
Kazuhiko Nakao
(K)
Tatsuki Ichikawa
(T)
Hidetaka Shibata
(H)
Satoshi Yamagiwa
(S)
Masataka Seike
(M)
Koichi Honda
(K)
Shotaro Sakisaka
(S)
Yasuaki Takeyama
(Y)
Masaru Harada
(M)
Michio Senju
(M)
Osamu Yokosuka
(O)
Tatsuo Kanda
(T)
Yoshiyuki Ueno
(Y)
Kentaro Kikuchi
(K)
Hirotoshi Ebinuma
(H)
Takashi Himoto
(T)
Michio Yasunami
(M)
Kazumoto Murata
(K)
Masashi Mizokami
(M)
Kazuhito Kawata
(K)
Shinji Shimoda
(S)
Yasuhiro Miyake
(Y)
Akinobu Takaki
(A)
Kazuhide Yamamoto
(K)
Katsuji Hirano
(K)
Takafumi Ichida
(T)
Akio Ido
(A)
Hirohito Tsubouchi
(H)
Kazuaki Chayama
(K)
Kenichi Harada
(K)
Yasuni Nakanuma
(Y)
Yoshihiko Maehara
(Y)
Akinobu Taketomi
(A)
Ken Shirabe
(K)
Yuji Soejima
(Y)
Akira Mori
(A)
Shintaro Yagi
(S)
Shinji Uemoto
(S)
Egawa H
(E)
Tomohiro Tanaka
(T)
Noriyo Yamashiki
(N)
Sumito Tamura
(S)
Yasuhiro Sugawara
(Y)
Norihiro Kokudo
(N)
Brian D Juran
(BD)
Elizabeth J Atkinson
(EJ)
Angela Cheung
(A)
Mariza de Andrade
(M)
Konstantinos N Lazaridis
(KN)
Naga Chalasani
(N)
Vel Luketic
(V)
Joseph Odin
(J)
Kapil Chopra
(K)
Aris Baras
(A)
Julie Horowitz
(J)
Goncalo Abecasis
(G)
Michael Cantor
(M)
Giovanni Coppola
(G)
Aris Economides
(A)
Luca A Lotta
(LA)
John D Overton
(JD)
Jeffrey G Reid
(JG)
Alan Shuldiner
(A)
Christina Beechert
(C)
Caitlin Forsythe
(C)
Erin D Fuller
(ED)
Zhenhua Gu
(Z)
Michael Lattari
(M)
Alexander Lopez
(A)
John D Overton
(JD)
Thomas D Schleicher
(TD)
Maria Sotiropoulos Padilla
(MS)
Karina Toledo
(K)
Louis Widom
(L)
Sarah E Wolf
(SE)
Manasi Pradhan
(M)
Kia Manoochehri
(K)
Ricardo H Ulloa
(RH)
Xiaodong Bai
(X)
Suganthi Balasubramanian
(S)
Leland Barnard
(L)
Andrew Blumenfeld
(A)
Gisu Eom
(G)
Lukas Habegger
(L)
Alicia Hawes
(A)
Shareef Khalid
(S)
Jeffrey G Reid
(JG)
Evan K Maxwell
(EK)
William Salerno
(W)
Jeffrey C Staples
(JC)
Marcus B Jones
(MB)
Lyndon J Mitnaul
(LJ)
Richard Sturgess
(R)
Christopher Healey
(C)
Andrew Yeoman
(A)
Anton Vj Gunasekera
(AV)
Paul Kooner
(P)
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(K)
V Sathyanarayana
(V)
Yiannis Kallis
(Y)
Javaid Subhani
(J)
Rory Harvey
(R)
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(R)
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(P)
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(D)
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(R)
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(T)
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(J)
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(C)
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(M)
Paul Southern
(P)
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(JA)
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(DA)
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(S)
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(G)
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(V)
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(B)
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(MR)
Carole E Collins
(CE)
David Elphick
(D)
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(M)
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(F)
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(M)
Tom Yapp
(T)
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(R)
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(MJ)
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(G)
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(IR)
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(J)
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(G)
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(K)
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(S)
Dina Mansour
(D)
Matilda Beckley
(M)
Coral Hollywood
(C)
Terry Wong
(T)
Richard Marley
(R)
John Ramage
(J)
Harriet M Gordon
(HM)
Jo Ridpath
(J)
Theodore Ngatchu
(T)
Vijay Paul Bob Grover
(VP)
Ray G Shidrawi
(RG)
George Abouda
(G)
L Corless
(L)
Mark Narain
(M)
Ian Rees
(I)
Ashley Brown
(A)
Simon Taylor-Robinson
(S)
Joy Wilkins
(J)
Leonie Grellier
(L)
Paul Banim
(P)
Debasish Das
(D)
Michael A Heneghan
(MA)
Howard Curtis
(H)
Helen C Matthews
(HC)
Faiyaz Mohammed
(F)
Mark Aldersley
(M)
Raj Srirajaskanthan
(R)
Giles Walker
(G)
Alistair McNair
(A)
Amar Sharif
(A)
Sambit Sen
(S)
George Bird
(G)
Martin I Prince
(MI)
Geeta Prasad
(G)
Paul Kitchen
(P)
Adrian Barnardo
(A)
Chirag Oza
(C)
Nurani N Sivaramakrishnan
(NN)
Prakash Gupta
(P)
Amir Shah
(A)
Chris Dj Evans
(CD)
Subrata Saha
(S)
Katharine Pollock
(K)
Peter Bramley
(P)
Ashis Mukhopadhya
(A)
Stephen T Barclay
(ST)
Natasha McDonald
(N)
Andrew J Bathgate
(AJ)
Kelvin Palmer
(K)
John F Dillon
(JF)
Simon M Rushbrook
(SM)
Robert Przemioslo
(R)
Chris McDonald
(C)
Andrew Millar
(A)
Cheh Tai
(C)
Stephen Mitchell
(S)
Jane Metcalf
(J)
Syed Shaukat
(S)
Mary Ninkovic
(M)
Udi Shmueli
(U)
Andrew Davis
(A)
Asifabbas Naqvi
(A)
Tom Jw Lee
(TJ)
Stephen Ryder
(S)
Jane Collier
(J)
Howard Klass
(H)
Matthew E Cramp
(ME)
Nichols Sharer
(N)
Richard Aspinall
(R)
Deb Ghosh
(D)
Andrew C Douds
(AC)
Jonathan Booth
(J)
Earl Williams
(E)
Hyder Hussaini
(H)
John Christie
(J)
Steven Mann
(S)
Douglas Thorburn
(D)
Aileen Marshall
(A)
Imran Patanwala
(I)
Aftab Ala
(A)
Julia Maltby
(J)
Ray Matthew
(R)
Chris Corbett
(C)
Sam Vyas
(S)
Saket Singhal
(S)
Dermot Gleeson
(D)
Sharat Misra
(S)
Jeff Butterworth
(J)
Keith George
(K)
Tim Harding
(T)
Andrew Douglass
(A)
Harriet Mitchison
(H)
Simon Panter
(S)
Jeremy Shearman
(J)
Gary Bray
(G)
Michael Roberts
(M)
Graham Butcher
(G)
Daniel Forton
(D)
Zahid Mahmood
(Z)
Matthew Cowan
(M)
Debashis Das
(D)
Chin Lye Ch'ng
(CL)
Mesbah Rahman
(M)
Gregory C A Whatley
(GCA)
Emma Wesley
(E)
Aditya Mandal
(A)
Sanjiv Jain
(S)
Stephen P Pereira
(SP)
Mark Wright
(M)
Palak Trivedi
(P)
Fiona H Gordon
(FH)
Esther Unitt
(E)
Altaf Palejwala
(A)
Andrew Austin
(A)
Vishwaraj Vemala
(V)
Allister Grant
(A)
Andrew D Higham
(AD)
Alison Brind
(A)
Ray Mathew
(R)
Mark Cox
(M)
Subramaniam Ramakrishnan
(S)
Alistair King
(A)
Simon Whalley
(S)
Jocelyn Fraser
(J)
S J Thomson
(SJ)
Andrew Bell
(A)
Voi Shim Wong
(VS)
Richard Kia
(R)
Ian Gee
(I)
Richard Keld
(R)
Rupert Ransford
(R)
James Gotto
(J)
Charles Millson
(C)
Commentaires et corrections
Type : ErratumIn
Type : ErratumIn
Informations de copyright
Copyright © 2021. Published by Elsevier B.V.
Déclaration de conflit d'intérêts
Conflicts of interest GMH has consulted and/or been a speaker for Intercept, Genfit, Cymabay, GSK, and Falk. RNS and GFM have each received research funding from Intercept Pharmaceuticals. HJC, JJF, KU, RD, YA, YH, MK, NN, S-SK, OG, YK, MN, KT, RT, YS, ZL, BDJ, EJA, AG, MC, RA, AC, MdA, AB, JH, MARF, DS, DEJ, SF, AS, VLM, KNL, CIA, MFS, PI, KAS, XM and MN report no conflicts of interest. Please refer to the accompanying ICMJE disclosure forms for further details.
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