An international genome-wide meta-analysis of primary biliary cholangitis: Novel risk loci and candidate drugs.

ALSPAC ERN RARE-LIVER Genomic co-localization Network-based in silico drug efficacy screening UK-PBC

Journal

Journal of hepatology
ISSN: 1600-0641
Titre abrégé: J Hepatol
Pays: Netherlands
ID NLM: 8503886

Informations de publication

Date de publication:
09 2021
Historique:
received: 25 08 2020
revised: 11 03 2021
accepted: 07 04 2021
pubmed: 26 5 2021
medline: 10 2 2022
entrez: 25 5 2021
Statut: ppublish

Résumé

Primary biliary cholangitis (PBC) is a chronic liver disease in which autoimmune destruction of the small intrahepatic bile ducts eventually leads to cirrhosis. Many patients have inadequate response to licensed medications, motivating the search for novel therapies. Previous genome-wide association studies (GWAS) and meta-analyses (GWMA) of PBC have identified numerous risk loci for this condition, providing insight into its aetiology. We undertook the largest GWMA of PBC to date, aiming to identify additional risk loci and prioritise candidate genes for in silico drug efficacy screening. We combined new and existing genotype data for 10,516 cases and 20,772 controls from 5 European and 2 East Asian cohorts. We identified 56 genome-wide significant loci (20 novel) including 46 in European, 13 in Asian, and 41 in combined cohorts; and a 57 This study has identified additional risk loci for PBC, provided a hierarchy of agents that could be trialled in this condition, and emphasised the value of genetic and genomic approaches to drug discovery in complex disorders. Primary biliary cholangitis (PBC) is a chronic liver disease that eventually leads to cirrhosis. In this study, we analysed genetic information from 10,516 people with PBC and 20,772 healthy individuals recruited in Canada, China, Italy, Japan, the UK, or the USA. We identified several genetic regions associated with PBC. Each of these regions contains several genes. For each region, we used diverse sources of evidence to help us choose the gene most likely to be involved in causing PBC. We used these 'candidate genes' to help us identify medications that are currently used for treatment of other conditions, which might also be useful for treatment of PBC.

Sections du résumé

BACKGROUNDS & AIMS
Primary biliary cholangitis (PBC) is a chronic liver disease in which autoimmune destruction of the small intrahepatic bile ducts eventually leads to cirrhosis. Many patients have inadequate response to licensed medications, motivating the search for novel therapies. Previous genome-wide association studies (GWAS) and meta-analyses (GWMA) of PBC have identified numerous risk loci for this condition, providing insight into its aetiology. We undertook the largest GWMA of PBC to date, aiming to identify additional risk loci and prioritise candidate genes for in silico drug efficacy screening.
METHODS
We combined new and existing genotype data for 10,516 cases and 20,772 controls from 5 European and 2 East Asian cohorts.
RESULTS
We identified 56 genome-wide significant loci (20 novel) including 46 in European, 13 in Asian, and 41 in combined cohorts; and a 57
CONCLUSIONS
This study has identified additional risk loci for PBC, provided a hierarchy of agents that could be trialled in this condition, and emphasised the value of genetic and genomic approaches to drug discovery in complex disorders.
LAY SUMMARY
Primary biliary cholangitis (PBC) is a chronic liver disease that eventually leads to cirrhosis. In this study, we analysed genetic information from 10,516 people with PBC and 20,772 healthy individuals recruited in Canada, China, Italy, Japan, the UK, or the USA. We identified several genetic regions associated with PBC. Each of these regions contains several genes. For each region, we used diverse sources of evidence to help us choose the gene most likely to be involved in causing PBC. We used these 'candidate genes' to help us identify medications that are currently used for treatment of other conditions, which might also be useful for treatment of PBC.

Identifiants

pubmed: 34033851
pii: S0168-8278(21)00334-2
doi: 10.1016/j.jhep.2021.04.055
pmc: PMC8811537
pii:
doi:

Types de publication

Journal Article Meta-Analysis Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Systematic Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

572-581

Subventions

Organisme : Medical Research Council
ID : MC_PC_19009
Pays : United Kingdom
Organisme : Department of Health
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/L001489/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_PC_15018
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BBI025751/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : G9815508
Pays : United Kingdom
Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/I025263/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : 217065/Z/19/Z
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 102858/Z/13/Z
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/M011186/1
Pays : United Kingdom
Organisme : Wellcome Trust
ID : WT088806
Pays : United Kingdom

Investigateurs

Katherine A Siminovitch (KA)
Gideon M Hirschfield (GM)
Andrew Mason (A)
Catherine Vincent (C)
Gang Xie (G)
Jinyi Zhang (J)
Ruqi Tang (R)
Xiong Ma (X)
Zhiqiang Li (Z)
Yongyong Shi (Y)
Andrea Affronti (A)
Piero L Almasio (PL)
Domenico Alvaro (D)
Pietro Andreone (P)
Angelo Andriulli (A)
Francesco Azzaroli (F)
Pier Maria Battezzati (PM)
Antonio Benedetti (A)
MariaConsiglia Bragazzi (M)
Maurizia Brunetto (M)
Savino Bruno (S)
Vincenza Calvaruso (V)
Vincenzo Cardinale (V)
Giovanni Casella (G)
Nora Cazzagon (N)
Antonio Ciaccio (A)
Barbara Coco (B)
Agostino Colli (A)
Guido Colloredo (G)
Massimo Colombo (M)
Silvia Colombo (S)
Laura Cristoferi (L)
Carmela Cursaro (C)
Lory Saveria Crocè (LS)
Andrea Crosignani (A)
Daphne D'Amato (D)
Francesca Donato (F)
Gianfranco Elia (G)
Luca Fabris (L)
Stefano Fagiuoli (S)
Carlo Ferrari (C)
Annarosa Floreani (A)
Andrea Galli (A)
Edoardo Giannini (E)
Ignazio Grattagliano (I)
Pietro Lampertico (P)
Ana Lleo (A)
Federica Malinverno (F)
Clara Mancuso (C)
Fabio Marra (F)
Marco Marzioni (M)
Sara Massironi (S)
Alberto Mattalia (A)
Luca Miele (L)
Chiara Milani (C)
Lorenzo Morini (L)
Filomena Morisco (F)
Luigi Muratori (L)
Paolo Muratori (P)
Grazia A Niro (GA)
Sarah O'Donnell (S)
Antonio Picciotto (A)
Piero Portincasa (P)
Cristina Rigamonti (C)
Vincenzo Ronca (V)
Floriano Rosina (F)
Giancarlo Spinzi (G)
Mario Strazzabosco (M)
Mirko Tarocchi (M)
Claudio Tiribelli (C)
Pierluigi Toniutto (P)
Luca Valenti (L)
Maria Vinci (M)
Massimo Zuin (M)
Hitomi Nakamura (H)
Seigo Abiru (S)
Shinya Nagaoka (S)
Atsumasa Komori (A)
Hiroshi Yatsuhashi (H)
Hiromi Ishibashi (H)
Masahiro Ito (M)
Kiyoshi Migita (K)
Hiromasa Ohira (H)
Shinji Katsushima (S)
Atsushi Naganuma (A)
Kazuhiro Sugi (K)
Tatsuji Komatsu (T)
Tomohiko Mannami (T)
Kouki Matsushita (K)
Kaname Yoshizawa (K)
Fujio Makita (F)
Toshiki Nikami (T)
Hideo Nishimura (H)
Hiroshi Kouno (H)
Hirotaka Kouno (H)
Hajime Ota (H)
Takuya Komura (T)
Yoko Nakamura (Y)
Masaaki Shimada (M)
Noboru Hirashima (N)
Toshiki Komeda (T)
Keisuke Ario (K)
Makoto Nakamuta (M)
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Kiyoshi Furuta (K)
Masahiro Kikuchi (M)
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Commentaires et corrections

Type : ErratumIn
Type : ErratumIn

Informations de copyright

Copyright © 2021. Published by Elsevier B.V.

Déclaration de conflit d'intérêts

Conflicts of interest GMH has consulted and/or been a speaker for Intercept, Genfit, Cymabay, GSK, and Falk. RNS and GFM have each received research funding from Intercept Pharmaceuticals. HJC, JJF, KU, RD, YA, YH, MK, NN, S-SK, OG, YK, MN, KT, RT, YS, ZL, BDJ, EJA, AG, MC, RA, AC, MdA, AB, JH, MARF, DS, DEJ, SF, AS, VLM, KNL, CIA, MFS, PI, KAS, XM and MN report no conflicts of interest. Please refer to the accompanying ICMJE disclosure forms for further details.

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Auteurs

Heather J Cordell (HJ)

Population Health Sciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, United Kingdom.

James J Fryett (JJ)

Population Health Sciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, United Kingdom.

Kazuko Ueno (K)

Genome Medical Science Project, National Center for Global Health and Medicine (NCGM), Tokyo, Japan.

Rebecca Darlay (R)

Population Health Sciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, United Kingdom.

Yoshihiro Aiba (Y)

Clinical Research Center, National Hospital Organization, Nagasaki Medical Center, Omura, Japan.

Yuki Hitomi (Y)

Department of Human Genetics, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.

Minae Kawashima (M)

Department of Human Genetics, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.

Nao Nishida (N)

Department of Human Genetics, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.

Seik-Soon Khor (SS)

Genome Medical Science Project, National Center for Global Health and Medicine (NCGM), Tokyo, Japan.

Olivier Gervais (O)

Human Biosciences Unit for the Top Global Course Center for the Promotion of Interdisciplinary Education and Research, Kyoto University, Kyoto, Japan; Center for Genomic Medicine, Graduate School of Medicine, Kyoto University, Kyoto, Japan.

Yosuke Kawai (Y)

Genome Medical Science Project, National Center for Global Health and Medicine (NCGM), Tokyo, Japan.

Masao Nagasaki (M)

Human Biosciences Unit for the Top Global Course Center for the Promotion of Interdisciplinary Education and Research, Kyoto University, Kyoto, Japan; Center for Genomic Medicine, Graduate School of Medicine, Kyoto University, Kyoto, Japan.

Katsushi Tokunaga (K)

Genome Medical Science Project, National Center for Global Health and Medicine (NCGM), Tokyo, Japan.

Ruqi Tang (R)

Division of Gastroenterology and Hepatology, Key Laboratory of Gastroenterology and Hepatology, Ministry of Health, State Key Laboratory for Oncogenes and Related Genes, Renji Hospital, School of Medicine, Shanghai JiaoTong University, Shanghai Institute of Digestive Disease, Shanghai, China.

Yongyong Shi (Y)

Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Collaborative Innovation Center for Brain Science, Shanghai Jiao Tong University, Shanghai, China; Affiliated Hospital of Qingdao University and Biomedical Sciences Institute of Qingdao University (Qingdao Branch of SJTU Bio-X Institutes), Qingdao University, Qingdao, China.

Zhiqiang Li (Z)

Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Collaborative Innovation Center for Brain Science, Shanghai Jiao Tong University, Shanghai, China; Affiliated Hospital of Qingdao University and Biomedical Sciences Institute of Qingdao University (Qingdao Branch of SJTU Bio-X Institutes), Qingdao University, Qingdao, China.

Brian D Juran (BD)

Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota, United States.

Elizabeth J Atkinson (EJ)

Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, Minnesota, United States.

Alessio Gerussi (A)

Division of Gastroenterology and Center for Autoimmune Liver Diseases, Department of Medicine and Surgery, University of Milano-Bicocca, Monza, Italy; European Reference Network on Hepatological Diseases (ERN RARE-LIVER), San Gerardo Hospital, Monza, Italy.

Marco Carbone (M)

Division of Gastroenterology and Center for Autoimmune Liver Diseases, Department of Medicine and Surgery, University of Milano-Bicocca, Monza, Italy; European Reference Network on Hepatological Diseases (ERN RARE-LIVER), San Gerardo Hospital, Monza, Italy.

Rosanna Asselta (R)

Department of Biomedical Sciences, Humanitas University, Pieve Emanuele, Milan, Italy; Humanitas Clinical and Research Center, IRCCS, Rozzano, Milan, Italy.

Angela Cheung (A)

Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota, United States.

Mariza de Andrade (M)

Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, Minnesota, United States.

Aris Baras (A)

Regeneron Genetics Center, Tarrytown, New York, United States.

Julie Horowitz (J)

Regeneron Genetics Center, Tarrytown, New York, United States.

Manuel A R Ferreira (MAR)

Regeneron Genetics Center, Tarrytown, New York, United States.

Dylan Sun (D)

Regeneron Genetics Center, Tarrytown, New York, United States.

David E Jones (DE)

Translational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, United Kingdom.

Steven Flack (S)

Academic Department of Medical Genetics, University of Cambridge, Cambridge, United Kingdom.

Ann Spicer (A)

Academic Department of Medical Genetics, University of Cambridge, Cambridge, United Kingdom.

Victoria L Mulcahy (VL)

Academic Department of Medical Genetics, University of Cambridge, Cambridge, United Kingdom.

Jinyoung Byan (J)

Institute for Clinical and Translational Research, Baylor College of Medicine, Houston, Texas, United States.

Younghun Han (Y)

Institute for Clinical and Translational Research, Baylor College of Medicine, Houston, Texas, United States.

Richard N Sandford (RN)

Academic Department of Medical Genetics, University of Cambridge, Cambridge, United Kingdom.

Konstantinos N Lazaridis (KN)

Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota, United States.

Christopher I Amos (CI)

Institute for Clinical and Translational Research, Baylor College of Medicine, Houston, Texas, United States.

Gideon M Hirschfield (GM)

Toronto Centre for Liver Disease, Division of Gastroenterology and Hepatology, University of Toronto, Toronto, Ontario, Canada.

Michael F Seldin (MF)

University of California, Davis, California, United States.

Pietro Invernizzi (P)

Division of Gastroenterology and Center for Autoimmune Liver Diseases, Department of Medicine and Surgery, University of Milano-Bicocca, Monza, Italy; European Reference Network on Hepatological Diseases (ERN RARE-LIVER), San Gerardo Hospital, Monza, Italy.

Katherine A Siminovitch (KA)

Departments of Medicine, Immunology and Medical Sciences, University of Toronto, Toronto, Ontario, Canada; Mount Sinai Hospital, Lunenfeld-Tanenbaum Research Institute and Toronto General Research Institute, Toronto, Ontario, Canada.

Xiong Ma (X)

Division of Gastroenterology and Hepatology, Key Laboratory of Gastroenterology and Hepatology, Ministry of Health, State Key Laboratory for Oncogenes and Related Genes, Renji Hospital, School of Medicine, Shanghai JiaoTong University, Shanghai Institute of Digestive Disease, Shanghai, China.

Minoru Nakamura (M)

Clinical Research Center, National Hospital Organization, Nagasaki Medical Center, Omura, Japan; Department of Hepatology, Nagasaki Graduate School of Biomedical Sciences, Japan.

George F Mells (GF)

Academic Department of Medical Genetics, University of Cambridge, Cambridge, United Kingdom. Electronic address: gfm26@cam.ac.uk.

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