Somatic PIK3R1 variation as a cause of vascular malformations and overgrowth.


Journal

Genetics in medicine : official journal of the American College of Medical Genetics
ISSN: 1530-0366
Titre abrégé: Genet Med
Pays: United States
ID NLM: 9815831

Informations de publication

Date de publication:
10 2021
Historique:
received: 14 12 2020
accepted: 04 05 2021
revised: 23 04 2021
pubmed: 28 5 2021
medline: 26 10 2021
entrez: 27 5 2021
Statut: ppublish

Résumé

Somatic activating variants in the PI3K-AKT pathway cause vascular malformations with and without overgrowth. We previously reported an individual with capillary and lymphatic malformation harboring a pathogenic somatic variant in PIK3R1, which encodes three PI3K complex regulatory subunits. Here, we investigate PIK3R1 in a large cohort with vascular anomalies and identify an additional 16 individuals with somatic mosaic variants in PIK3R1. Affected tissue from individuals with vascular lesions and overgrowth recruited from a multisite collaborative network was studied. Next-generation sequencing targeting coding regions of cell-signaling and cancer-associated genes was performed followed by assessment of variant pathogenicity. The phenotypic and variant spectrum associated with somatic variation in PIK3R1 is reported herein. Variants occurred in the inter-SH2 or N-terminal SH2 domains of all three PIK3R1 protein products. Phenotypic features overlapped those of the PIK3CA-related overgrowth spectrum (PROS). These overlapping features included mixed vascular malformations, sandal toe gap deformity with macrodactyly, lymphatic malformations, venous ectasias, and overgrowth of soft tissue or bone. Somatic PIK3R1 variants sharing attributes with cancer-associated variants cause complex vascular malformations and overgrowth. The PIK3R1-associated phenotypic spectrum overlaps with PROS. These data extend understanding of the diverse phenotypic spectrum attributable to genetic variation in the PI3K-AKT pathway.

Identifiants

pubmed: 34040190
doi: 10.1038/s41436-021-01211-z
pii: S1098-3600(21)05125-X
pmc: PMC8486672
doi:

Substances chimiques

PIK3R1 protein, human EC 2.7.1.-
Class Ia Phosphatidylinositol 3-Kinase EC 2.7.1.137

Types de publication

Journal Article Research Support, N.I.H., Intramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1882-1888

Subventions

Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : Intramural NIH HHS
ID : Z01 HG200328
Pays : United States

Informations de copyright

© 2021. The Author(s).

Références

Cancer Cell. 2009 Dec 8;16(6):463-74
pubmed: 19962665
J Mol Diagn. 2014 Jan;16(1):89-105
pubmed: 24211365
Clin Immunol. 2017 Mar;176:77-86
pubmed: 28104464
Am J Med Genet A. 2014 Jul;164A(7):1713-33
pubmed: 24782230
Proc Natl Acad Sci U S A. 2017 Feb 21;114(8):1982-1987
pubmed: 28167755
Am J Hum Genet. 2012 Jun 8;90(6):1108-15
pubmed: 22658544
Biosci Rep. 2017 Mar 15;37(2):
pubmed: 28143957
Nat Rev Drug Discov. 2014 Feb;13(2):140-56
pubmed: 24481312
J Invest Dermatol. 2018 Apr;138(4):957-967
pubmed: 29174369
Nucleic Acids Res. 2019 Jan 8;47(D1):D941-D947
pubmed: 30371878
Nat Med. 2016 Jan;22(1):97-104
pubmed: 26657142
Cancer Discov. 2011 Jul;1(2):170-85
pubmed: 21984976
Nat Biotechnol. 2016 Feb;34(2):155-63
pubmed: 26619011
Nat Rev Endocrinol. 2020 May;16(5):276-283
pubmed: 32127696
Sci Signal. 2011 Oct 18;4(195):re2
pubmed: 22009150
PLoS One. 2013 Dec 18;8(12):e84411
pubmed: 24367658
Am J Hum Genet. 2013 Jul 11;93(1):158-66
pubmed: 23810382
Clin Genet. 2016 Apr;89(4):501-506
pubmed: 26497935
Genet Med. 2015 May;17(5):405-24
pubmed: 25741868
Genome Med. 2017 Jan 23;9(1):4
pubmed: 28115009
Immunol Rev. 2009 Mar;228(1):253-72
pubmed: 19290933
Cancer Discov. 2012 May;2(5):401-4
pubmed: 22588877
N Engl J Med. 2011 Aug 18;365(7):611-9
pubmed: 21793738
Clin Immunol. 2017 Jun;179:77-80
pubmed: 28302518
J Allergy Clin Immunol. 2017 Feb;139(2):597-606.e4
pubmed: 27555459
Nat Genet. 2012 Jun 24;44(8):934-40
pubmed: 22729224
Sci Signal. 2013 Apr 02;6(269):pl1
pubmed: 23550210
Trends Mol Med. 2018 Oct;24(10):856-870
pubmed: 30197175
Nature. 2018 Jun;558(7711):540-546
pubmed: 29899452
Am J Med Genet C Semin Med Genet. 2013 May;163C(2):122-30
pubmed: 23592320
Nat Rev Genet. 2006 Aug;7(8):606-19
pubmed: 16847462
Nat Rev Immunol. 2016 Nov;16(11):702-714
pubmed: 27616589
Proc Natl Acad Sci U S A. 2010 Aug 31;107(35):15547-52
pubmed: 20713702

Auteurs

Catherine E Cottrell (CE)

The Steve and Cindy Rasmussen Institute for Genomic Medicine at Nationwide Children's Hospital, Columbus, OH, USA.
Department of Pathology, The Ohio State University, Columbus, OH, USA.

Nicole R Bender (NR)

Department of Dermatology, University of Florida, Gainesville, FL, USA.

Michael T Zimmermann (MT)

Bioinformatics Research and Development Laboratory, Genomic Sciences and Precision Medicine Center, Medical College of Wisconsin, Milwaukee, WI, USA.
Clinical and Translational Sciences Institute, Medical College of Wisconsin, Milwaukee, WI, USA.
Department of Biochemistry, Medical College of Wisconsin, Milwaukee, WI, USA.

Jonathan W Heusel (JW)

Department of Pathology & Immunology, Washington University School of Medicine, Saint Louis, MO, USA.
Department of Genetics, Washington University School of Medicine, Saint Louis, MO, USA.

Meagan Corliss (M)

Department of Pathology & Immunology, Washington University School of Medicine, Saint Louis, MO, USA.

Michael J Evenson (MJ)

Department of Pathology & Immunology, Washington University School of Medicine, Saint Louis, MO, USA.

Vincent Magrini (V)

The Steve and Cindy Rasmussen Institute for Genomic Medicine at Nationwide Children's Hospital, Columbus, OH, USA.

Donald J Corsmeier (DJ)

The Steve and Cindy Rasmussen Institute for Genomic Medicine at Nationwide Children's Hospital, Columbus, OH, USA.

Matthew Avenarius (M)

Department of Pathology and Laboratory Medicine, The Ohio State University Wexner Medical Center, Columbus, OH, USA.

Jeffrey N Dudley (JN)

Center for Precision Health Research, National Human Genome Research Institute, Bethesda, MD, USA.
University of Michigan Medical School, Ann Arbor, MI, USA.

Jennifer J Johnston (JJ)

Center for Precision Health Research, National Human Genome Research Institute, Bethesda, MD, USA.

Marjorie J Lindhurst (MJ)

Center for Precision Health Research, National Human Genome Research Institute, Bethesda, MD, USA.

Katinka Vigh-Conrad (K)

Division of Genetics, Oregon National Primate Research Center, Oregon Health & Science University, Portland, OR, USA.

Olivia M T Davies (OMT)

Medical College of Wisconsin, Milwaukee, WI, USA.

Carrie C Coughlin (CC)

Division of Dermatology, Departments of Medicine and Pediatrics, Washington University School of Medicine, Saint Louis, MO, USA.

Ilona J Frieden (IJ)

Department of Dermatology, University of California-San Francisco, San Francisco, CA, USA.

Megha Tollefson (M)

Departments of Dermatology and Pediatrics, Mayo Clinic, Rochester, MN, USA.

Andrea L Zaenglein (AL)

Dermatology and Pediatrics, Penn State Hershey Medical Center, Hershey, PA, USA.

Heather Ciliberto (H)

Town Square Dermatology, Coralville, IA, USA.

Laura L Tosi (LL)

Division of Orthopaedics & Sports Medicine, Children's National Hospital, Washington, DC, USA.

Robert K Semple (RK)

Centre for Cardiovascular Science, University of Edinburgh, Edinburgh, United Kingdom.

Leslie G Biesecker (LG)

Center for Precision Health Research, National Human Genome Research Institute, Bethesda, MD, USA.

Beth A Drolet (BA)

University of Wisconsin-Madison School of Medicine and Public Health, Madison, WI, USA. bdrolet@dermatology.wisc.edu.

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