COVID-19 classification of X-ray images using deep neural networks.
COVID-19
Machine learning
Radiography
Thoracic
X-rays
Journal
European radiology
ISSN: 1432-1084
Titre abrégé: Eur Radiol
Pays: Germany
ID NLM: 9114774
Informations de publication
Date de publication:
Dec 2021
Dec 2021
Historique:
received:
09
01
2021
accepted:
05
05
2021
revised:
13
04
2021
pubmed:
31
5
2021
medline:
17
11
2021
entrez:
30
5
2021
Statut:
ppublish
Résumé
In the midst of the coronavirus disease 2019 (COVID-19) outbreak, chest X-ray (CXR) imaging is playing an important role in diagnosis and monitoring of patients with COVID-19. We propose a deep learning model for detection of COVID-19 from CXRs, as well as a tool for retrieving similar patients according to the model's results on their CXRs. For training and evaluating our model, we collected CXRs from inpatients hospitalized in four different hospitals. In this retrospective study, 1384 frontal CXRs, of COVID-19 confirmed patients imaged between March and August 2020, and 1024 matching CXRs of non-COVID patients imaged before the pandemic, were collected and used to build a deep learning classifier for detecting patients positive for COVID-19. The classifier consists of an ensemble of pre-trained deep neural networks (DNNS), specifically, ReNet34, ReNet50¸ ReNet152, and vgg16, and is enhanced by data augmentation and lung segmentation. We further implemented a nearest-neighbors algorithm that uses DNN-based image embeddings to retrieve the images most similar to a given image. Our model achieved accuracy of 90.3%, (95% CI: 86.3-93.7%) specificity of 90% (95% CI: 84.3-94%), and sensitivity of 90.5% (95% CI: 85-94%) on a test dataset comprising 15% (350/2326) of the original images. The AUC of the ROC curve is 0.96 (95% CI: 0.93-0.97). We provide deep learning models, trained and evaluated on CXRs that can assist medical efforts and reduce medical staff workload in handling COVID-19. • A machine learning model was able to detect chest X-ray (CXR) images of patients tested positive for COVID-19 with accuracy and detection rate above 90%. • A tool was created for finding existing CXR images with imaging characteristics most similar to a given CXR, according to the model's image embeddings.
Identifiants
pubmed: 34052882
doi: 10.1007/s00330-021-08050-1
pii: 10.1007/s00330-021-08050-1
pmc: PMC8164481
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
9654-9663Informations de copyright
© 2021. European Society of Radiology.
Références
Comput Methods Programs Biomed. 2020 Nov;196:105581
pubmed: 32534344
Diagnostics (Basel). 2021 Sep 30;11(10):
pubmed: 34679510
Radiology. 2021 Feb;298(2):E88-E97
pubmed: 32969761
PLoS One. 2020 Jul 28;15(7):e0236621
pubmed: 32722697
Radiol Cardiothorac Imaging. 2020 Feb 13;2(1):e200028
pubmed: 33778544
Radiol Cardiothorac Imaging. 2020 Feb 13;2(1):e200034
pubmed: 33778547
Int J Biomed Imaging. 2020 Oct 6;2020:8889023
pubmed: 33061946
Sci Rep. 2020 Nov 11;10(1):19549
pubmed: 33177550
SN Comput Sci. 2021;2(6):434
pubmed: 34485924
Sci Rep. 2020 Aug 12;10(1):13590
pubmed: 32788602
ACS Nano. 2020 Apr 28;14(4):3822-3835
pubmed: 32223179
Inf Fusion. 2021 Dec;76:1-7
pubmed: 33967656
PLoS One. 2020 Dec 10;15(12):e0242958
pubmed: 33301459
Radiology. 2020 Aug;296(2):E115-E117
pubmed: 32073353
Eur Radiol. 2020 Jun;30(6):3306-3309
pubmed: 32055945
Korean J Radiol. 2020 Apr;21(4):494-500
pubmed: 32100485
Med Image Anal. 2020 Oct;65:101794
pubmed: 32781377