COVID-19 classification of X-ray images using deep neural networks.


Journal

European radiology
ISSN: 1432-1084
Titre abrégé: Eur Radiol
Pays: Germany
ID NLM: 9114774

Informations de publication

Date de publication:
Dec 2021
Historique:
received: 09 01 2021
accepted: 05 05 2021
revised: 13 04 2021
pubmed: 31 5 2021
medline: 17 11 2021
entrez: 30 5 2021
Statut: ppublish

Résumé

In the midst of the coronavirus disease 2019 (COVID-19) outbreak, chest X-ray (CXR) imaging is playing an important role in diagnosis and monitoring of patients with COVID-19. We propose a deep learning model for detection of COVID-19 from CXRs, as well as a tool for retrieving similar patients according to the model's results on their CXRs. For training and evaluating our model, we collected CXRs from inpatients hospitalized in four different hospitals. In this retrospective study, 1384 frontal CXRs, of COVID-19 confirmed patients imaged between March and August 2020, and 1024 matching CXRs of non-COVID patients imaged before the pandemic, were collected and used to build a deep learning classifier for detecting patients positive for COVID-19. The classifier consists of an ensemble of pre-trained deep neural networks (DNNS), specifically, ReNet34, ReNet50¸ ReNet152, and vgg16, and is enhanced by data augmentation and lung segmentation. We further implemented a nearest-neighbors algorithm that uses DNN-based image embeddings to retrieve the images most similar to a given image. Our model achieved accuracy of 90.3%, (95% CI: 86.3-93.7%) specificity of 90% (95% CI: 84.3-94%), and sensitivity of 90.5% (95% CI: 85-94%) on a test dataset comprising 15% (350/2326) of the original images. The AUC of the ROC curve is 0.96 (95% CI: 0.93-0.97). We provide deep learning models, trained and evaluated on CXRs that can assist medical efforts and reduce medical staff workload in handling COVID-19. • A machine learning model was able to detect chest X-ray (CXR) images of patients tested positive for COVID-19 with accuracy and detection rate above 90%. • A tool was created for finding existing CXR images with imaging characteristics most similar to a given CXR, according to the model's image embeddings.

Identifiants

pubmed: 34052882
doi: 10.1007/s00330-021-08050-1
pii: 10.1007/s00330-021-08050-1
pmc: PMC8164481
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

9654-9663

Informations de copyright

© 2021. European Society of Radiology.

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Auteurs

Daphna Keidar (D)

ETH Zürich, Department of Computer Science, Rämistrasse 101, 8092, Zürich, Switzerland.

Daniel Yaron (D)

Department of Math and Computer Science, Weizmann Institute of Science, Rehovot, Israel.

Elisha Goldstein (E)

Bioinformatics Unit, Life Sciences Core Facilities, Weizmann Institute of Science, Rehovot, Israel.

Yair Shachar (Y)

Eyeway Vision Ltd., Yoni Netanyahu St 3, Or Yehuda, Israel.

Ayelet Blass (A)

Department of Math and Computer Science, Weizmann Institute of Science, Rehovot, Israel.

Leonid Charbinsky (L)

Department of Radiology, HaEmek Medical Center, Afula, Israel.

Israel Aharony (I)

Department of Radiology, HaEmek Medical Center, Afula, Israel.

Liza Lifshitz (L)

Department of Radiology, HaEmek Medical Center, Afula, Israel.

Dimitri Lumelsky (D)

Department of Radiology, HaEmek Medical Center, Afula, Israel.

Ziv Neeman (Z)

Department of Radiology, HaEmek Medical Center, Afula, Israel.

Matti Mizrachi (M)

Department of Otolaryngology, Head and Neck Surgery, Galilee Medical Center, Nahariya, Israel.
The Azrieli Faculty of Medicine, Bar-Ilan University, Safed, Israel.

Majd Hajouj (M)

Department of Otolaryngology, Head and Neck Surgery, Galilee Medical Center, Nahariya, Israel.
The Azrieli Faculty of Medicine, Bar-Ilan University, Safed, Israel.

Nethanel Eizenbach (N)

Department of Otolaryngology, Head and Neck Surgery, Galilee Medical Center, Nahariya, Israel.
The Azrieli Faculty of Medicine, Bar-Ilan University, Safed, Israel.

Eyal Sela (E)

Department of Otolaryngology, Head and Neck Surgery, Galilee Medical Center, Nahariya, Israel.
The Azrieli Faculty of Medicine, Bar-Ilan University, Safed, Israel.

Chedva S Weiss (CS)

Cardiothoracic Imaging Unit, Shaare Zedek Medical Center, Jerusalem, Israel.

Philip Levin (P)

Cardiothoracic Imaging Unit, Shaare Zedek Medical Center, Jerusalem, Israel.

Ofer Benjaminov (O)

Cardiothoracic Imaging Unit, Shaare Zedek Medical Center, Jerusalem, Israel.

Gil N Bachar (GN)

Radiology Department, Rabin Medical Center, Jabotinsky Rd 39, Petah Tikva, Israel.
Sakler School of Medicine, Tel-Aviv University, Ramat Aviv, Tel-Aviv, Israel.

Shlomit Tamir (S)

Radiology Department, Rabin Medical Center, Jabotinsky Rd 39, Petah Tikva, Israel.
Sakler School of Medicine, Tel-Aviv University, Ramat Aviv, Tel-Aviv, Israel.

Yael Rapson (Y)

Radiology Department, Rabin Medical Center, Jabotinsky Rd 39, Petah Tikva, Israel.
Sakler School of Medicine, Tel-Aviv University, Ramat Aviv, Tel-Aviv, Israel.

Dror Suhami (D)

Radiology Department, Rabin Medical Center, Jabotinsky Rd 39, Petah Tikva, Israel.
Sakler School of Medicine, Tel-Aviv University, Ramat Aviv, Tel-Aviv, Israel.

Eli Atar (E)

Radiology Department, Rabin Medical Center, Jabotinsky Rd 39, Petah Tikva, Israel.
Sakler School of Medicine, Tel-Aviv University, Ramat Aviv, Tel-Aviv, Israel.

Amiel A Dror (AA)

Department of Otolaryngology, Head and Neck Surgery, Galilee Medical Center, Nahariya, Israel.
The Azrieli Faculty of Medicine, Bar-Ilan University, Safed, Israel.

Naama R Bogot (NR)

Cardiothoracic Imaging Unit, Shaare Zedek Medical Center, Jerusalem, Israel.

Ahuva Grubstein (A)

Radiology Department, Rabin Medical Center, Jabotinsky Rd 39, Petah Tikva, Israel.
Sakler School of Medicine, Tel-Aviv University, Ramat Aviv, Tel-Aviv, Israel.

Nogah Shabshin (N)

Department of Radiology, HaEmek Medical Center, Afula, Israel.

Yishai M Elyada (YM)

Mobileye Vision Technologies, Ltd., Hartom 13, Jerusalem, Israel.

Yonina C Eldar (YC)

Department of Math and Computer Science, Weizmann Institute of Science, Rehovot, Israel. yonina.eldar@weizmann.ac.il.

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