A simple vapor-diffusion method enables protein crystallization inside the HARE serial crystallography chip.

fixed-target crystallography in cellulo crystallization in vivo crystals protein crystallization serial crystallography

Journal

Acta crystallographica. Section D, Structural biology
ISSN: 2059-7983
Titre abrégé: Acta Crystallogr D Struct Biol
Pays: United States
ID NLM: 101676043

Informations de publication

Date de publication:
01 Jun 2021
Historique:
received: 18 02 2021
accepted: 10 04 2021
entrez: 2 6 2021
pubmed: 3 6 2021
medline: 30 11 2021
Statut: ppublish

Résumé

Fixed-target serial crystallography has become an important method for the study of protein structure and dynamics at synchrotrons and X-ray free-electron lasers. However, sample homogeneity, consumption and the physical stress on samples remain major challenges for these high-throughput experiments, which depend on high-quality protein microcrystals. The batch crystallization procedures that are typically applied require time- and sample-intensive screening and optimization. Here, a simple protein crystallization method inside the features of the HARE serial crystallography chips is reported that circumvents batch crystallization and allows the direct transfer of canonical vapor-diffusion conditions to in-chip crystallization. Based on conventional hanging-drop vapor-diffusion experiments, the crystallization solution is distributed into the wells of the HARE chip and equilibrated against a reservoir with mother liquor. Using this simple method, high-quality microcrystals were generated with sufficient density for the structure determination of four different proteins. A new protein variant was crystallized using the protein concentrations encountered during canonical crystallization experiments, enabling structure determination from ∼55 µg of protein. Additionally, structure determination from intracellular crystals grown in insect cells cultured directly in the features of the HARE chips is demonstrated. In cellulo crystallization represents a comparatively unexplored space in crystallization, especially for proteins that are resistant to crystallization using conventional techniques, and eliminates any need for laborious protein purification. This in-chip technique avoids harvesting the sensitive crystals or any further physical handling of the crystal-containing cells. These proof-of-principle experiments indicate the potential of this method to become a simple alternative to batch crystallization approaches and also as a convenient extension to canonical crystallization screens.

Identifiants

pubmed: 34076595
pii: S2059798321003855
doi: 10.1107/S2059798321003855
pmc: PMC8171066
doi:

Substances chimiques

Proteins 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

820-834

Subventions

Organisme : Deutsche Forschungsgemeinschaft
ID : 194651731
Organisme : NIH HHS
ID : EY021514
Pays : United States
Organisme : Joachim Herz Stiftung
ID : Biomedical Physics of Infection
Organisme : NEI NIH HHS
ID : R01 EY021514
Pays : United States
Organisme : Deutsche Forschungsgemeinschaft
ID : 451079909
Organisme : Deutsche Forschungsgemeinschaft
ID : 458246365
Organisme : Bundesministerium für Bildung und Forschung
ID : 05K18FLA

Informations de copyright

open access.

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Auteurs

Brenna Norton-Baker (B)

Department for Atomically Resolved Dynamics, Max-Planck-Institute for Structure and Dynamics of Matter, Luruper Chaussee 149, 22761 Hamburg, Germany.

Pedram Mehrabi (P)

Department for Atomically Resolved Dynamics, Max-Planck-Institute for Structure and Dynamics of Matter, Luruper Chaussee 149, 22761 Hamburg, Germany.

Juliane Boger (J)

Institute of Biochemistry, Center for Structural and Cell Biology in Medicine, University of Lübeck, Ratzeburger Allee 160, 23562 Lübeck, Germany.

Robert Schönherr (R)

Institute of Biochemistry, Center for Structural and Cell Biology in Medicine, University of Lübeck, Ratzeburger Allee 160, 23562 Lübeck, Germany.

David von Stetten (D)

European Molecular Biology Laboratory, Hamburg Unit c/o Deutsches Elektronen-Synchrotron, 22607 Hamburg, Germany.

Hendrik Schikora (H)

Scientific Support Unit Machine Physics, Max-Planck-Institute for Structure and Dynamics of Matter, Luruper Chaussee 149, 22761 Hamburg, Germany.

Ashley O Kwok (AO)

Department of Chemistry, University of California, Irvine, CA 92697-2025, USA.

Rachel W Martin (RW)

Department of Chemistry, University of California, Irvine, CA 92697-2025, USA.

R J Dwayne Miller (RJD)

Department of Physics, Universität Hamburg, Jungiusstrasse 9, 20355 Hamburg, Germany.

Lars Redecke (L)

Institute of Biochemistry, Center for Structural and Cell Biology in Medicine, University of Lübeck, Ratzeburger Allee 160, 23562 Lübeck, Germany.

Eike C Schulz (EC)

Department for Atomically Resolved Dynamics, Max-Planck-Institute for Structure and Dynamics of Matter, Luruper Chaussee 149, 22761 Hamburg, Germany.

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Classifications MeSH